Evidence map›Paper›PMID 30664655›Full record

ArticleNature communications2019

A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia.

Kaustubh Adhikari, Javier Mendoza-Revilla, Anood Sohail, Macarena Fuentes-Guajardo, Jodie Lampert, Juan Camilo Chacón-Duque, Malena Hurtado, Valeria Villegas, Vanessa Granja, Victor Acuña-Alonzo and 22 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed, 3 pooled it
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 3 syntheses or guidelines pooled it, 200 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. Beyond the Classics: The Synergy of AI and Genomics Reveals an Expanded Repertoire of Pigmentation Genes.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2026
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. A Comprehensive Review of GWASs of Human Hair Traits.The Journal of investigative dermatology · 2025
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 16 institutions in 12 countries.

Kaustubh AdhikariDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.
Javier Mendoza-RevillaDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.
Anood SohailDepartment of Genetics, Cambridge University, Cambridge, CB2 3EH, UK.
Macarena Fuentes-GuajardoDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.
Jodie LampertDepartment of Genetics and Genome Biology, University of Leicester, Leicester, LE1 7RH, UK.
Juan Camilo Chacón-DuqueDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0003-0715-1947
Malena HurtadoLaboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, 31, Peru.
Valeria VillegasLaboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, 31, Peru.
Vanessa GranjaLaboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, 31, Peru.
Victor Acuña-AlonzoDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.
Claudia JaramilloGENMOL (Genética Molecular), Universidad de Antioquia, Medellín, 5001000, Colombia.
William AriasGENMOL (Genética Molecular), Universidad de Antioquia, Medellín, 5001000, Colombia.
Rodrigo Barquera LozanoNational Institute of Anthropology and History, Mexico City, 4510, Mexico.
Paola EverardoNational Institute of Anthropology and History, Mexico City, 4510, Mexico.
Jorge Gómez-ValdésNational Institute of Anthropology and History, Mexico City, 4510, Mexico.
Hugo Villamil-RamírezUnidad de Genomica de Poblaciones Aplicada a la Salud, Facultad de Química, UNAM-Instituto Nacional de Medicina Genómica, Mexico City, 4510, Mexico.
Caio C Silva de CerqueiraDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Tábita HunemeierDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Virginia RamalloDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Lavinia Schuler-FacciniDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Francisco M SalzanoDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Rolando Gonzalez-JoséInstituto Patagonico de Ciencias Sociales y Humanas, Centro Nacional Patagonico, CONICET, Puerto Madryn, U9129ACD, Argentina.
Maria-Cátira BortoliniDepartamento de Genética, Universidade Federal do Rio Grande do Sul, Porto Alegre, 91501-970, Brazil.
Samuel Canizales-QuinterosUnidad de Genomica de Poblaciones Aplicada a la Salud, Facultad de Química, UNAM-Instituto Nacional de Medicina Genómica, Mexico City, 4510, Mexico.
Carla GalloLaboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, 31, Peru.
Giovanni PolettiLaboratorios de Investigación y Desarrollo, Facultad de Ciencias y Filosofía, Universidad Peruana Cayetano Heredia, Lima, 31, Peru.
Gabriel BedoyaGENMOL (Genética Molecular), Universidad de Antioquia, Medellín, 5001000, Colombia.
Francisco RothhammerInstituto de Alta Investigación, Universidad de Tarapaca, Arica, 1000000, Chile.
Desmond J TobinCentre for Skin Sciences, Faculty of Life Sciences, University of Bradford, Bradford, BD7 1DP, West Yorkshire, UK.ORCID http://orcid.org/0000-0003-4566-9392
Matteo FumagalliDepartment of Life Sciences, Silwood Park campus, Imperial College London, Ascot, SL5 7PY, UK.
David BaldingDepartment of Genetics, Evolution and Environment, and UCL Genetics Institute, University College London, London, WC1E 6BT, UK.
Andrés Ruiz-LinaresMinistry of Education Key Laboratory of Contemporary Anthropology and Collaborative Innovation Center of Genetics and Development, School of Life Sciences and Human Phenome Institute, Fudan University, Shanghai, 200438, China. andresruiz@fudan.edu.cn.
Universidade Federal do Rio Grande do Sul · BRUniversidad Peruana Cayetano Heredia · PENational Institute of Anthropology and History · MXUniversidad de Antioquia · CONational Institute of Genomic Medicine · MXUniversity College London · GBCentre National de la Recherche Scientifique · FRCentro Científico Tecnológico Patagónico · ARImperial College London · GBMax Planck Institute for the Science of Human History · DEThe University of Melbourne · AUUniversidad de Santiago de Chile · CLUniversity College Dublin · IEUniversity of Cambridge · GBUniversity of Leicester · GBUniversity of Tarapacá · CL

Funding

SOLAR-Eclipse Computational Tools for Imaging GeneticsR01EB015611 · NIBIB · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI KOCHUNOV, PETER V. · 2012 to 2024
$5.0M
6 · The paper itself

Abstract

We report a genome-wide association scan in >6,000 Latin Americans for pigmentation of skin and eyes. We found eighteen signals of association at twelve genomic regions. These include one novel locus for skin pigmentation (in 10q26) and three novel loci for eye pigmentation (in 1q32, 20q13 and 22q12). We demonstrate the presence of multiple independent signals of association in the 11q14 and 15q13 regions (comprising the GRM5/TYR and HERC2/OCA2 genes, respectively) and several epistatic interactions among independently associated alleles. Strongest association with skin pigmentation at 19p13 was observed for an Y182H missense variant (common only in East Asians and Native Americans) in MFSD12, a gene recently associated with skin pigmentation in Africans. We show that the frequency of the derived allele at Y182H is significantly correlated with lower solar radiation intensity in East Asia and infer that MFSD12 was under selection in East Asians, probably after their split from Europeans.

Indexed as

Epistasis, GeneticGenome, HumanQuantitative Trait LociAllelesAsian PeopleBiological EvolutionEthnicityEye ColorFemaleGene ExpressionGene FrequencyGenetics, PopulationGenome-Wide Association StudyGuanine Nucleotide Exchange FactorsHumansLatin AmericaGRM5 protein, humanGuanine Nucleotide Exchange FactorsHERC2 protein, humanMembrane ProteinsMembrane Transport ProteinsMFSD12 protein, humanOCA2 protein, humanReceptor, Metabotropic Glutamate 5Ubiquitin-Protein Ligases

Identifiers

PMID30664655
PMCPMC6341102
OpenAlexW2910993873

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.