Evidence map›Paper›PMID 30664616›Full record

ArticleTranslational psychiatry2019

Family-based exome sequencing and case-control analysis implicate CEP41 as an ASD gene.

Ashok Patowary, So Yeon Won, Shin Ji Oh, Ryan R Nesbitt, Marilyn Archer, Debbie Nickerson, Wendy H Raskind, Raphael Bernier, Ji Eun Lee, Zoran Brkanac

Open access · goldAbstract read
In one paragraph

Article in Translational psychiatry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Current State of Modeling Human Psychiatric Disorders Using Zebrafish.International journal of molecular sciences · 2023
    Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Molecular Dysregulation in Autism Spectrum Disorder.Journal of personalized medicine · 2021
    Review
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ashok PatowaryDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-7507-3907
So Yeon WonDepartment of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, Korea.
Shin Ji OhDepartment of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, Korea.
Ryan R NesbittDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.
Marilyn ArcherDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.
Debbie NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Wendy H RaskindDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.
Raphael BernierDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA.
Ji Eun LeeDepartment of Health Sciences and Technology, SAIHST, Sungkyunkwan University, Seoul, Korea. jieun.lee@skku.edu.
Zoran BrkanacDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, WA, USA. zbrkanac@uw.edu.
University of Washington · USSungkyunkwan University · KRSamsung Medical Center · KR

Funding

UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI GARDEN, GWENN A · 2014 to 2019
$7.9M
Next Generation Gene Discovery in Familial AutismR01MH092367 · NIMH · UNIVERSITY OF WASHINGTON · PI BRKANAC, ZORAN · 2011 to 2015
$3.3M
NHGRI NIH HHS UM1 HG006493NICHD NIH HHS U54 HD083091NIMH NIH HHS R01 MH092367
6 · The paper itself

Abstract

Autism Spectrum Disorder (ASD) is a complex neurodevelopmental disorder with a strong genetic component. Although next-generation sequencing (NGS) technologies have been successfully applied to gene identification in de novo ASD, the genetic architecture of familial ASD remains largely unexplored. Our approach, which leverages the high specificity and sensitivity of NGS technology, has focused on rare variants in familial autism. We used NGS exome sequencing in 26 families with distantly related affected individuals to identify genes with private gene disrupting and missense variants of interest (VOI). We found that the genes carrying VOIs were enriched for biological processes related to cell projection organization and neuron development, which is consistent with the neurodevelopmental hypothesis of ASD. For a subset of genes carrying VOIs, we then used targeted NGS sequencing and gene-based variant burden case-control analysis to test for association with ASD. Missense variants in one gene, CEP41, associated significantly with ASD (p = 6.185

Indexed as

Genetic Predisposition to DiseaseMutation, MissenseAnimalsAutism Spectrum DisorderBehavior, AnimalCase-Control StudiesDisease Models, AnimalExomeExome SequencingFamily HealthFemaleHigh-Throughput Nucleotide SequencingHumansMaleProteinsZebrafishCEP41 protein, humanProteins

Identifiers

PMID30664616
PMCPMC6341097
OpenAlexW2929926469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.