Evidence map›Paper›PMID 30664273›Full record

ArticleHepatology (Baltimore, Md.)2019

Identification of Polycystic Kidney Disease 1 Like 1 Gene Variants in Children With Biliary Atresia Splenic Malformation Syndrome.

John-Paul Berauer, Anya I Mezina, David T Okou, Aniko Sabo, Donna M Muzny, Richard A Gibbs, Madhuri R Hegde, Pankaj Chopra, David J Cutler, David H Perlmutter and 24 more

Open access · greenAbstract read
In one paragraph

Article in Hepatology (Baltimore, Md.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 82 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Biliary atresia-related liver fibrosis.Frontiers in cell and developmental biology · 2026
    Review
  6. Article
  7. HomozygousRenal failure · 2025
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Genetic background and biliary atresia.World journal of pediatric surgery · 2025
    Review
  15. Syndromic variants of biliary atresia.World journal of pediatric surgery · 2025
    Review
  16. Article
  17. Biliary atresia.Nature reviews. Disease primers · 2024
    Review
  18. Article
  19. Clinical and laboratory features of biliary atresia and patterns of management practices: Saudi national study (2000-2018).Saudi journal of gastroenterology : official journal of the Saudi Gastroenterology Association · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 14 institutions in 3 countries.

John-Paul BerauerDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Emory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, GA.
Anya I MezinaDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Emory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, GA.
David T OkouDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Emory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, GA.
Aniko SaboHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX.
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX.
Madhuri R HegdeDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA.
Pankaj ChopraDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA.
David J CutlerDepartment of Human Genetics, Emory University School of Medicine, Atlanta, GA.
David H PerlmutterDepartment of Pediatrics, Washington University School of Medicine, St. Louis, MO.
Laura N BullInstitute for Human Genetics and Liver Center Laboratory, Department of Medicine, University of California San Francisco, San Francisco, CA.
Richard J ThompsonInstitute of Liver Studies, King's College London, London, UK.
Kathleen M LoomesDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Perelman School of Medicine at the University of Pennsylvania and Children's Hospital of Philadelphia, Philadelphia, PA.
Nancy B SpinnerDepartment of Pathology and Laboratory Medicine, Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA.
Ramakrishnan RajagopalanDepartment of Pathology and Laboratory Medicine, Division of Genomic Diagnostics, Children's Hospital of Philadelphia, Philadelphia, PA.
Stephen L GutheryDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, University of Utah, and Intermountain Primary Children's Hospital, Salt Lake City, UT.
Barry MooreDepartment of Human Genetics, University of Utah, Salt Lake City, UT.
Mark YandellDepartment of Human Genetics, University of Utah, Salt Lake City, UT.
Sanjiv HarpavatDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Baylor College of Medicine, Houston, TX.
John C MageeUniversity of Michigan Medical School, Ann Arbor, MI.
Binita M KamathDivision of Gastroenterology, Hepatology and Nutrition, Hospital for Sick Children and University of Toronto, Toronto, ON, Canada.
Jean P MollestonDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Indiana University School of Medicine and Riley Hospital for Children, Indianapolis, IN.
Jorge A BezerraDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Cincinnati Children's Hospital Medical Center, Cincinnati, OH.ORCID 0000-0001-9667-7742
Karen F MurrayDepartment of Pediatrics, Division of Gastroenterology and Hepatology, University of Washington School of Medicine and Seattle Children's Hospital, Seattle, WA.
Estella M AlonsoDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Ann and Robert H. Lurie Children's Hospital of Chicago, Chicago, IL.
Philip RosenthalDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, University of California San Francisco, San Francisco, CA.
Robert H SquiresDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Children's Hospital of Pittsburgh of UPMC, Pittsburgh, PA.
Kasper S WangDepartment of Surgery, Division of Pediatric Surgery, Children's Hospital of Los Angeles, University of Southern California, Los Angeles, CA.
Milton J FinegoldDepartment of Pediatrics, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX.
Pierre RussoDepartment of Pathology and Laboratory Medicine, Children's Hospital of Philadelphia, Philadelphia, PA.
Averell H SherkerLiver Diseases Research Branch, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD.
Ronald J SokolDepartment of Pediatrics, Section of Gastroenterology, Hepatology and Nutrition, Children's Hospital Colorado and University of Colorado School of Medicine, Aurora, CO.
Saul J KarpenDepartment of Pediatrics, Division of Gastroenterology, Hepatology and Nutrition, Emory University School of Medicine and Children's Healthcare of Atlanta, Atlanta, GA.ORCID 0000-0002-3379-7592
Childhood Liver Disease Research Network (ChiLDReN)
Emory University · USBaylor College of Medicine · USChildren's Hospital of Philadelphia · USUniversity of California, San Francisco · USChildren's Hospital Colorado · USChildren's Hospital of Pittsburgh · USCincinnati Children's Hospital Medical Center · USKing's College London · GBLurie Children's Hospital · USNational Institutes of Health · USPrimary Children's Hospital · USSeattle Children's Hospital · USUniversity of Southern California · USWashington University in St. Louis · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
University of Pittsburgh Clinical and Translational Science InstituteUL1TR001857 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2016 to 2025
$129.3M
Clinical and Translational Science InstituteUL1TR001872 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI COLLARD, HAROLD R, JACOBY, VANESSA · 2016 to 2025
$112.1M
Transform Dissemination and Implementation Science in CTSA ProgramsUL1TR002319 · NCATS · UNIVERSITY OF WASHINGTON · PI John K. Amory · 2017 to 2026
$100.0M
Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
INSTITUTE FOR TRANSLATIONAL HEALTH SCIENCE (UL1): BPCAUL1RR025014 · NCRR · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2007 to 2011
$51.5M
NIH Prior Approval Process ProfessionalUL1TR002535 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2018 to 2022
$51.1M
Institute of Translational Health SciencesUL1TR000423 · NCATS · UNIVERSITY OF WASHINGTON · PI DISIS, MARY L. · 2012 to 2016
$49.4M
Institutional Clinical and Translational Science AwardUL1TR000003 · NCATS · UNIVERSITY OF PENNSYLVANIA · PI FITZGERALD, GARRET A · 2012 to 2015
$38.9M
LCenter for Clinical and Translational Science and TrainingUL1TR001425 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E., KISSELA, BRETT M · 2015 to 2024
$37.5M
Childhood Liver Disease Research Network Data Coordinating CenterU01DK062456 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MAGEE, JOHN C, MERION, ROBERT M · 2002 to 2019
$36.8M
Utah Center for Clinical and Translational ScienceUL1TR002538 · NCATS · UNIVERSITY OF UTAH · PI HESS, RACHEL, MAJERSIK, JENNIFER JUHL · 2018 to 2022
$26.0M
NCATS NIH HHS TL1 TR000456NCATS NIH HHS UL1 TR000003NCATS NIH HHS UL1 TR000077NCATS NIH HHS UL1 TR000423NCATS NIH HHS UL1 TR000454NCATS NIH HHS UL1 TR001108NCATS NIH HHS UL1 TR001425NCATS NIH HHS UL1 TR001857NCATS NIH HHS UL1 TR001872NCATS NIH HHS UL1 TR002319NCATS NIH HHS UL1 TR002378NCATS NIH HHS UL1 TR002535NCATS NIH HHS UL1 TR002538NCRR NIH HHS UL1 RR025014NHGRI NIH HHS U54 HG003273NIDDK NIH HHS P30 DK078392NIDDK NIH HHS U01 DK062436NIDDK NIH HHS U01 DK062445NIDDK NIH HHS U01 DK062452NIDDK NIH HHS U01 DK062453NIDDK NIH HHS U01 DK062456NIDDK NIH HHS U01 DK062466NIDDK NIH HHS U01 DK062470NIDDK NIH HHS U01 DK062481NIDDK NIH HHS U01 DK062497NIDDK NIH HHS U01 DK062500NIDDK NIH HHS U01 DK062503NIDDK NIH HHS U01 DK084536NIDDK NIH HHS U01 DK084538NIDDK NIH HHS U01 DK084575NIDDK NIH HHS U01 DK103135NIDDK NIH HHS U01 DK103140NIDDK NIH HHS U01 DK103149NIDDK NIH HHS U24 DK062456NIH HHS S10 OD018164
6 · The paper itself

Abstract

Biliary atresia (BA) is the most common cause of end-stage liver disease in children and the primary indication for pediatric liver transplantation, yet underlying etiologies remain unknown. Approximately 10% of infants affected by BA exhibit various laterality defects (heterotaxy) including splenic abnormalities and complex cardiac malformations-a distinctive subgroup commonly referred to as the biliary atresia splenic malformation (BASM) syndrome. We hypothesized that genetic factors linking laterality features with the etiopathogenesis of BA in BASM patients could be identified through whole-exome sequencing (WES) of an affected cohort. DNA specimens from 67 BASM subjects, including 58 patient-parent trios, from the National Institute of Diabetes and Digestive and Kidney Diseases-supported Childhood Liver Disease Research Network (ChiLDReN) underwent WES. Candidate gene variants derived from a prespecified set of 2,016 genes associated with ciliary dysgenesis and/or dysfunction or cholestasis were prioritized according to pathogenicity, population frequency, and mode of inheritance. Five BASM subjects harbored rare and potentially deleterious biallelic variants in polycystic kidney disease 1 like 1 (PKD1L1), a gene associated with ciliary calcium signaling and embryonic laterality determination in fish, mice, and humans. Heterozygous PKD1L1 variants were found in 3 additional subjects. Immunohistochemical analysis of liver from the one BASM subject available revealed decreased PKD1L1 expression in bile duct epithelium when compared to normal livers and livers affected by other noncholestatic diseases. Conclusion: WES identified biallelic and heterozygous PKD1L1 variants of interest in 8 BASM subjects from the ChiLDReN data set; the dual roles for PKD1L1 in laterality determination and ciliary function suggest that PKD1L1 is a biologically plausible, cholangiocyte-expressed candidate gene for the BASM syndrome.

Indexed as

Abnormalities, MultipleBiliary AtresiaChildDatabases, FactualExome SequencingFemaleGene Expression Regulation, DevelopmentalGenetic VariationHumansInfantInfant, NewbornMaleMembrane ProteinsPolycystic Kidney DiseasesRetrospective StudiesSpleenMembrane ProteinsPKD1L1 protein, human

Identifiers

PMID30664273
PMCPMC6642859
OpenAlexW2912706849

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.