Evidence map›Paper›PMID 30661980›Full record

ArticleMolecular cell2019

An Isoprene Lipid-Binding Protein Promotes Eukaryotic Coenzyme Q Biosynthesis.

Danielle C Lohman, Deniz Aydin, Helaina C Von Bank, Robert W Smith, Vanessa Linke, Erin Weisenhorn, Molly T McDevitt, Paul Hutchins, Emily M Wilkerson, Benjamin Wancewicz and 8 more

Open access · bronzeAbstract readVideo-Audio Media
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Characterization ofMetabolites · 2023
    Article
  7. Coenzyme Q biochemistry and biosynthesis.Trends in biochemical sciences · 2023
    Review
  8. CoQAntioxidants (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Article
  11. Manganese-driven CoQ deficiency.Nature communications · 2022
    Article
  12. How plants synthesize coenzyme Q.Plant communications · 2022
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Cellular Models for Primary CoQ Deficiency Pathogenesis Study.International journal of molecular sciences · 2021
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 2 countries.

Danielle C LohmanMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Deniz AydinInstitute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
Helaina C Von BankMorgridge Institute for Research, Madison, WI 53715, USA.
Robert W SmithDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Vanessa LinkeDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Erin WeisenhornDepartment of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Molly T McDevittDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Paul HutchinsDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA; Genome Center of Wisconsin, Madison, WI 53715, USA.
Emily M WilkersonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Benjamin WancewiczDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Jason RussellMorgridge Institute for Research, Madison, WI 53715, USA; Genome Center of Wisconsin, Madison, WI 53715, USA.
Matthew S StefelyMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Emily T BeebeDepartment of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Adam JochemMorgridge Institute for Research, Madison, WI 53715, USA.
Joshua J CoonMorgridge Institute for Research, Madison, WI 53715, USA; Department of Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI 53715, USA; Genome Center of Wisconsin, Madison, WI 53715, USA.
Craig A BingmanMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA.
Matteo Dal PeraroInstitute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland. Electronic address: matteo.dalperaro@epfl.ch.
David J PagliariniMorgridge Institute for Research, Madison, WI 53715, USA; Department of Biochemistry, University of Wisconsin-Madison, Madison, WI 53715, USA. Electronic address: dpagliarini@morgridge.org.
University of Wisconsin–Madison · USMorgridge Institute for Research · USÉcole Polytechnique Fédérale de Lausanne · CHEnergy Center of Wisconsin · US

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Structure, Function and Regulation of the ProteomeR35GM118110 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$9.1M
RESEARCH TRAINING IN HEMATOLOGYT32HL007899 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Jane Ellen Churpek · 1998 to 2026
$8.2M
Systematic functional annotation of the mitochondrial proteomeR01GM115591 · NIGMS · MORGRIDGE INSTITUTE FOR RESEARCH, INC. · PI PAGLIARINI, DAVID J · 2016 to 2018
$1.1M
NHLBI NIH HHS T32 HL007899NIGMS NIH HHS P41 GM108538NIGMS NIH HHS R01 GM115591NIGMS NIH HHS R35 GM118110NIGMS NIH HHS T32 GM008349
6 · The paper itself

Abstract

The biosynthesis of coenzyme Q presents a paradigm for how cells surmount hydrophobic barriers in lipid biology. In eukaryotes, CoQ precursors-among nature's most hydrophobic molecules-must somehow be presented to a series of enzymes peripherally associated with the mitochondrial inner membrane. Here, we reveal that this process relies on custom lipid-binding properties of COQ9. We show that COQ9 repurposes the bacterial TetR fold to bind aromatic isoprenes with high specificity, including CoQ intermediates that likely reside entirely within the bilayer. We reveal a process by which COQ9 associates with cardiolipin-rich membranes and warps the membrane surface to access this cargo. Finally, we identify a molecular interface between COQ9 and the hydroxylase COQ7, motivating a model whereby COQ9 presents intermediates directly to CoQ enzymes. Overall, our results provide a mechanism for how a lipid-binding protein might access, select, and deliver specific cargo from a membrane to promote biosynthesis.

Indexed as

Binding SitesCardiolipinsCrystallographyMembrane LipidsMitochondrial MembranesMitochondrial ProteinsMolecular Docking SimulationMolecular Dynamics SimulationProtein BindingProtein Conformation, alpha-HelicalProtein TransportSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStructure-Activity RelationshipTryptophanUbiquinoneCardiolipinsCAT5 protein, S cerevisiaeCoq9 protein, S cerevisiaeMembrane LipidsMitochondrial ProteinsSaccharomyces cerevisiae ProteinsTryptophanUbiquinonecoenzyme Qlipid-binding proteinmitochondriaperipheral membrane protein

Identifiers

PMID30661980
PMCPMC6386619
OpenAlexW2909659351

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.