Evidence map›Paper›PMID 30661372›Full record

ArticleBrain connectivity2019

White Matter Connectome Edge Density in Children with Autism Spectrum Disorders: Potential Imaging Biomarkers Using Machine-Learning Models.

Seyedmehdi Payabvash, Eva M Palacios, Julia P Owen, Maxwell B Wang, Teresa Tavassoli, Molly Gerdes, Anne Brandes-Aitken, Daniel Cuneo, Elysa J Marco, Pratik Mukherjee

Open access · greenAbstract read
In one paragraph

Article in Brain connectivity, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 4 pooled it
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 4 syntheses or guidelines pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Pooled it
  5. Article
  6. Article
  7. Unsupervised Dimensionality Reduction Techniques for the Assessment of ASD Biomarkers.Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · 2025
    Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Seyedmehdi Payabvash1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
Eva M Palacios1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
Julia P Owen1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
Maxwell B Wang1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
Teresa Tavassoli5 Department of Psychiatry, University of California, San Francisco, San Francisco, California.
Molly Gerdes5 Department of Psychiatry, University of California, San Francisco, San Francisco, California.
Anne Brandes-Aitken5 Department of Psychiatry, University of California, San Francisco, San Francisco, California.
Daniel Cuneo1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
Elysa J Marco5 Department of Psychiatry, University of California, San Francisco, San Francisco, California.
Pratik Mukherjee1 Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, California.
University of California, San Francisco · USPittsburg State University · US

Funding

Magnetic Source Imaging and Sensory Behavioral Characterization in AutismK23MH083890 · NIMH · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARCO, ELYSA JILL · 2008 to 2011
$695k
NIMH NIH HHS K23 MH083890
6 · The paper itself

Abstract

Prior neuroimaging studies have reported white matter network underconnectivity as a potential mechanism for autism spectrum disorder (ASD). In this study, we examined the structural connectome of children with ASD using edge density imaging (EDI), and then applied machine-learning algorithms to identify children with ASD based on tract-based connectivity metrics. Boys aged 8-12 years were included: 14 with ASD and 33 typically developing children. The edge density (ED) maps were computed from probabilistic streamline tractography applied to high angular resolution diffusion imaging. Tract-based spatial statistics was used for voxel-wise comparison and coregistration of ED maps in addition to conventional diffusion tensor imaging (DTI) metrics of fractional anisotropy (FA), mean diffusivity (MD), and radial diffusivity (RD). Tract-based average DTI/connectome metrics were calculated and used as input for different machine-learning models: naïve Bayes, random forest, support vector machines (SVMs), and neural networks. For these models, cross-validation was performed with stratified random sampling ( × 1,000 permutations). The average accuracy among validation samples was calculated. In voxel-wise analysis, the body and splenium of corpus callosum, bilateral superior and posterior corona radiata, and left superior longitudinal fasciculus showed significantly lower ED in children with ASD; whereas, we could not find significant difference in FA, MD, and RD maps between the two study groups. Overall, machine-learning models using tract-based ED metrics had better performance in identification of children with ASD compared with those using FA, MD, and RD. The EDI-based random forest models had greater average accuracy (75.3%), specificity (97.0%), and positive predictive value (81.5%), whereas EDI-based polynomial SVM had greater sensitivity (51.4%) and negative predictive values (77.7%). In conclusion, we found reduced density of connectome edges in the posterior white matter tracts of children with ASD, and demonstrated the feasibility of connectome-based machine-learning algorithms in identification of children with ASD.

Indexed as

AlgorithmsAnisotropyAutism Spectrum DisorderBayes TheoremBiomarkersBrainChildComputer SimulationConnectomeDiffusion Tensor ImagingHumansMachine LearningMagnetic Resonance ImagingMaleNeuroimagingSensitivity and SpecificityBiomarkersautismdiffusion tensor imagingedge density imagingmachine learning

Identifiers

PMID30661372
PMCPMC6444925
OpenAlexW2908621664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.