Evidence map›Paper›PMID 30660747›Full record

ArticleChemistry and physics of lipids2019

Lipidomic consequences of phospholipid synthesis defects in Escherichia coli revealed by HILIC-ion mobility-mass spectrometry.

Kelly M Hines, Libin Xu

Abstract read
In one paragraph

Article in Chemistry and physics of lipids, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Do Nanodisc Assembly Conditions Affect Natural Lipid Uptake?Journal of the American Society for Mass Spectrometry · 2023
    Article
  6. Review
  7. Article
  8. A rapid single-phase extraction for polar staphylococcal lipids.Analytical and bioanalytical chemistry · 2023
    Article
  9. Article
  10. Article
  11. Transient Complexity ofMetabolites · 2022
    Article
  12. Article
  13. Review
  14. HutW fromBiochemistry · 2021
    Article
  15. Article
  16. Untargeted Lipidomics Analysis of the CyanobacteriumInternational journal of molecular sciences · 2020
    Article
  17. Article
  18. Article
  19. Recent applications of mass spectrometry in bacterial lipidomics.Analytical and bioanalytical chemistry · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kelly M HinesDepartment of Medicinal Chemistry, University of Washington School of Pharmacy, Seattle, WA, 98195, United States.
Libin XuDepartment of Medicinal Chemistry, University of Washington School of Pharmacy, Seattle, WA, 98195, United States. Electronic address: libinxu@uw.edu.
University of Washington · US

Funding

Contribution of altered lipid metabolism to resistance to cell envelope-targeting antimicrobials in MRSAR01AI136979 · NIAID · UNIVERSITY OF WASHINGTON · PI Brian James Werth, Libin Xu · 2018 to 2026
$4.1M
NIAID NIH HHS R01 AI136979
6 · The paper itself

Abstract

Our understanding of phospholipid biosynthesis in Gram-positive and Gram-negative bacteria is derived from the prototypical Gram-negative organism Escherichia coli. The inner and outer membranes of E. coli are largely composed of phosphatidylethanolamine (PE), minor amounts of phosphatidylglycerol (PG) and cardiolipin (CL). We report here the utility of hydrophilic interaction liquid chromatography (HILIC) paired with ion mobility-mass spectrometry (IM-MS) for the comprehensive analysis of the E. coli lipidome. Using strains with chromosomal deletions in the PG and CL synthesis genes pgsA and clsABC, respectively, we show that defective phospholipid biosynthesis in E. coli results in fatty-acid specific changes in select lipid classes and the presence of the minor triacylated phospholipids, acylphosphatidyl glycerol (acylPG) and N-acylphosphatidylethanolamine (N-acylPE). Notably, acylPGs were accumulated in the clsABC-KO strain, but were absent in other mutant strains. The separation of 1-lyso and 2-lyso-phosphatidylethanolamines (lysoPEs) is demonstrated in both the HILIC and IM dimensions. Using our previously validated calibration method, collision cross section values of nearly 200 phospholipids found in E. coli were determined on a traveling wave IM-MS platform, including newly reported values for cardiolipins, positional isomers of lysoPEs, acylPGs and N-acylPEs.

Indexed as

Chromatography, LiquidEscherichia coliHydrophobic and Hydrophilic InteractionsLipidomicsPhosphatidylethanolaminesPhospholipidsSpectrometry, Mass, Electrospray IonizationPhosphatidylethanolaminesPhospholipidsEscherichia coliIon mobilityLipidomicsMass spectrometryPhospholipids

Identifiers

PMID30660747
PMCPMC6438183
OpenAlexW2909817869

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.