Evidence map›Paper›PMID 30660184›Full record

ArticleBMC genomics2019

Dose-dependent impact of oxytetracycline on the veal calf microbiome and resistome.

Bart J F Keijser, Valeria Agamennone, Tim J van den Broek, Martien Caspers, Adri van de Braak, Richard Bomers, Mieke Havekes, Eric Schoen, Martin van Baak, Daniël Mioch and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Trial
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  5. Article
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  9. Transmission of antimicrobial resistance (AMR) during animal transport.EFSA journal. European Food Safety Authority · 2022
    Article
  10. FI: The Fecobiome Initiative.Foodborne pathogens and disease · 2022
    Article
  11. PeerJ · 2022
    Article
  12. Article
  13. Review
  14. A review of the resistome within the digestive tract of livestock.Journal of animal science and biotechnology · 2021
    Review
  15. Article
  16. Article
  17. Parenteral Antimicrobial Treatment Diminishes FecalFrontiers in veterinary science · 2021
    Article
  18. Changes in the Carbon Metabolism ofFrontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Bart J F KeijserResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands. bart.keijser@tno.nl.ORCID http://orcid.org/0000-0003-1597-2948
Valeria AgamennoneResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands.
Tim J van den BroekResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands. tim.vandenbroek@tno.nl.
Martien CaspersResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands.
Adri van de BraakDUCARES B.V, Reactorweg 47-A, 3542 AD, Utrecht, The Netherlands.
Richard BomersDierenartsenpraktijk Vaassen, Laan van Fasna 18, 8171 KH, Vaassen, The Netherlands.
Mieke HavekesResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands.
Eric SchoenDepartment of Risk Analysis of Products in Development, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands.
Martin van BaakDUCARES B.V, Reactorweg 47-A, 3542 AD, Utrecht, The Netherlands.
Daniël MiochDUCARES B.V, Reactorweg 47-A, 3542 AD, Utrecht, The Netherlands.
Lonneke BomersSKV, Nevelgaarde 20d, 3436 ZZ, Nieuwegein, The Netherlands.
Roy C MontijnResearch Group Microbiology and Systems Biology, TNO, Utrechtseweg 48, 3704 HE, Zeist, The Netherlands.
Netherlands Organisation for Applied Scientific Research · NL

Funding

Agentschap NL 060.24960
6 · The paper itself

Abstract

backgroundAntibiotic therapy is commonly used in animal agriculture. Antibiotics excreted by the animals can contaminate farming environments, resulting in long term exposure of animals to sub-inhibitory levels of antibiotics. Little is known on the effect of this exposure on antibiotic resistance. In this study, we aimed to investigate the long term effects of sub-inhibitory levels of antibiotics on the gut microbiota composition and resistome of veal calves in vivo. Forty-two veal calves were randomly assigned to three groups. The first group (OTC-high) received therapeutic oral dosages of 1 g oxytetracycline (OTC), twice per day, during 5 days. The second group (OTC-low) received an oral dose of OTC of 100-200 μg per day during 7 weeks, mimicking animal exposure to environmental contamination. The third group (CTR) did not receive OTC, serving as unexposed control. Antibiotic residue levels were determined over time. The temporal effects on the gut microbiota and antibiotic resistance gene abundance was analysed by metagenomic sequencing.

resultsIn the therapeutic group, OTC levels exceeded MIC values. The low group remained at sub-inhibitory levels. The control group did not reach any significant OTC levels. 16S rRNA gene-based analysis revealed significant changes in the calf gut microbiota. Time-related changes accounted for most of the variation in the sequence data. Therapeutic application of OTC had transient effect, significantly impacting gut microbiota composition between day 0 and day 2. By metagenomic sequence analysis we identified six antibiotic resistance genes representing three gene classes (tetM, floR and mel) that differed in relative abundance between any of the intervention groups and the control. qPCR was used to validate observations made by metagenomic sequencing, revealing a peak of tetM abundance at day 28-35 in the OTC-high group. No increase in resistance genes abundance was seen in the OTC-low group.

conclusionsUnder the conditions tested, sub-therapeutic administration of OTC did not result in increased tetM resistance levels as observed in the therapeutic group.

Indexed as

AnimalsAnti-Bacterial AgentsCattleDose-Response Relationship, DrugDrug Resistance, MicrobialFecesGastrointestinal MicrobiomeGenes, BacterialMetagenomicsMicrobial Sensitivity TestsOxytetracyclineRandom AllocationRNA, Ribosomal, 16SSequence Analysis, DNAAnti-Bacterial AgentsOxytetracyclineRNA, Ribosomal, 16SAntibioticAntibiotic resistanceGut microbiomeMetagenomeMinimum selective concentrationOxytetracyclineResistomeSub-therapeutic concentrationVeal calves

Identifiers

PMID30660184
PMCPMC6339435
OpenAlexW2911095395

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.