Evidence map›Paper›PMID 30659182›Full record

ArticleNature communications2019

DNA methylation in mice is influenced by genetics as well as sex and life experience.

Sara A Grimm, Takashi Shimbo, Motoki Takaku, James W Thomas, Scott Auerbach, Brian D Bennett, John R Bucher, Adam B Burkholder, Frank Day, Ying Du and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 57 citations in OpenAlex.

  1. The HIV Reservoir and Immune Landscape Across the Life Course of Women: Implications for Cure Strategies.American journal of reproductive immunology (New York, N.Y. : 1989) · 2026
    Review
  2. Article
  3. Article
  4. Genetic heritage of war: exploring transgenerational inheritance of PTSD and its molecular background.Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Review
  5. CpG site methylation regulates mouse Rec8 gene promoter activity.The Journal of reproduction and development · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 2 institutions in 1 country.

Sara A GrimmDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Takashi ShimboDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Motoki TakakuDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
James W ThomasNIH Intramural Sequencing Center, National Human Genome Research Institute, 5625 Fishers Lane, Rockville, MD, 20852, USA.
Scott AuerbachNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Brian D BennettDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
John R BucherNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Adam B BurkholderDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Frank DayDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Ying DuDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Christopher G DuncanDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
John E FrenchNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Julie F FoleyNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Jianying LiDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
B Alex MerrickNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Raymond R TiceNational Toxicology Program, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Tianyuan WangDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
Xiaojiang XuDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
NISC Comparative Sequencing Program
Pierre R BushelDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
David C FargoDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA.
James C MullikinNIH Intramural Sequencing Center, National Human Genome Research Institute, 5625 Fishers Lane, Rockville, MD, 20852, USA.ORCID http://orcid.org/0000-0003-0825-3750
Paul A WadeDivision of Intramural Research, NIEHS, 111 TW Alexander Drive, Research Triangle Park, NC, 27709, USA. wadep2@niehs.nih.gov.ORCID http://orcid.org/0000-0002-6042-357X
National Human Genome Research Institute · USResearch Triangle Park Foundation · US

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Microarray and Genome InformaticsZIAES102345 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BUSHEL, ROBERT · 2009 to 2021
$10.8M
NIH HHS ES103146
6 · The paper itself

Abstract

DNA methylation is an essential epigenetic process in mammals, intimately involved in gene regulation. Here we address the extent to which genetics, sex, and pregnancy influence genomic DNA methylation by intercrossing 2 inbred mouse strains, C57BL/6N and C3H/HeN, and analyzing DNA methylation in parents and offspring using whole-genome bisulfite sequencing. Differential methylation across genotype is detected at thousands of loci and is preserved on parental alleles in offspring. In comparison of autosomal DNA methylation patterns across sex, hundreds of differentially methylated regions are detected. Comparison of animals with different histories of pregnancy within our study reveals a CpG methylation pattern that is restricted to female animals that had borne offspring. Collectively, our results demonstrate the stability of CpG methylation across generations, clarify the interplay of epigenetics with genetics and sex, and suggest that CpG methylation may serve as an epigenetic record of life events in somatic tissues at loci whose expression is linked to the relevant biology.

Indexed as

Epigenesis, GeneticAnimalsCpG IslandsDNA MethylationFemaleMaleMice, Inbred C3HMice, Inbred C57BLPregnancyPregnancy, AnimalSex FactorsSpecies SpecificityWhole Genome Sequencing

Identifiers

PMID30659182
PMCPMC6338756
OpenAlexW2909484358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.