Evidence map›Paper›PMID 30659180›Full record

ArticleNature communications2019

LEADeR role of miR-205 host gene as long noncoding RNA in prostate basal cell differentiation.

Valentina Profumo, Barbara Forte, Stefano Percio, Federica Rotundo, Valentina Doldi, Elena Ferrari, Nicola Fenderico, Matteo Dugo, Dario Romagnoli, Matteo Benelli and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 1 synthesis or guideline pooled it, 49 citations in OpenAlex.

  1. Pooled it
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  16. Deciphering the Functional Long Non-Coding RNAs Derived from MicroRNA Loci.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Valentina ProfumoDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.
Barbara ForteDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0003-4811-5934
Stefano PercioDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-9362-2639
Federica RotundoDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-7252-0828
Valentina DoldiDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-4800-0961
Elena FerrariDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.
Nicola FendericoOncode Institute and Department of Cell Biology, Centre for Molecular Medicine, University Medical Centre Utrecht, Utrecht, 3584 CX, The Netherlands.ORCID http://orcid.org/0000-0003-3599-7931
Matteo DugoDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0001-9786-2763
Dario RomagnoliCentre for Integrative Biology, University of Trento, Trento, 38123, Italy.
Matteo BenelliCentre for Integrative Biology, University of Trento, Trento, 38123, Italy.
Riccardo ValdagniDepartment of Oncology and Hemato-oncology, University of Milan, Milan, 20133, Italy.
Diletta DolfiniDepartment of Biosciences, University of Milan, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-5346-6096
Nadia ZaffaroniDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy.ORCID http://orcid.org/0000-0002-4669-0890
Paolo GandelliniDepartment of Applied Research and Technological Development, Fondazione IRCCS Istituto Nazionale dei Tumori, Milan, 20133, Italy. paolo.gandellini@istitutotumori.mi.it.ORCID http://orcid.org/0000-0002-7811-3377
Fondazione IRCCS Istituto Nazionale dei Tumori · ITUniversity of Milan · ITUniversity of Trento · ITOncode Institute · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Though miR-205 function has been largely characterized, the nature of its host gene, MIR205HG, is still completely unknown. Here, we show that only lowly expressed alternatively spliced MIR205HG transcripts act as de facto pri-miRNAs, through a process that involves Drosha to prevent unfavorable splicing and directly mediate miR-205 excision. Notably, MIR205HG-specific processed transcripts revealed to be functional per se as nuclear long noncoding RNA capable of regulating differentiation of human prostate basal cells through control of the interferon pathway. At molecular level, MIR205HG directly binds the promoters of its target genes, which have an Alu element in proximity of the Interferon-Regulatory Factor (IRF) binding site, and represses their transcription likely buffering IRF1 activity, with the ultimate effect of preventing luminal differentiation. As MIR205HG functions autonomously from (albeit complementing) miR-205 in preserving the basal identity of prostate epithelial cells, it warrants reannotation as LEADeR (Long Epithelial Alu-interacting Differentiation-related RNA).

Indexed as

Cell DifferentiationCell Line, TumorCells, CulturedCRISPR-Cas SystemsEpithelial CellsGene EditingHumansMaleMicroRNAsPromoter Regions, GeneticProstateRibonuclease IIIRNA, Long NoncodingTranscriptomeMicroRNAsMIR205, humanRibonuclease IIIRNA, Long Noncoding

Identifiers

PMID30659180
PMCPMC6338800
OpenAlexW2908704513

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.