Evidence map›Paper›PMID 30659174›Full record

ArticleNature communications2019

Structural elements of a pH-sensitive inhibitor binding site in NMDA receptors.

Michael C Regan, Zongjian Zhu, Hongjie Yuan, Scott J Myers, Dave S Menaldino, Yesim A Tahirovic, Dennis C Liotta, Stephen F Traynelis, Hiro Furukawa

Open access · greenAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Dynamic control of NMDA receptor CaProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Src dependency of the regulation of LTP by alternative splicing ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Article
  12. Article
  13. Structural insights into NMDA receptor pharmacology.Biochemical Society transactions · 2023
    Review
  14. Article
  15. Article
  16. Targeting NMDA Receptor Complex in Management of Epilepsy.Pharmaceuticals (Basel, Switzerland) · 2022
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Michael C ReganWM Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA.
Zongjian ZhuDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Hongjie YuanDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Scott J MyersDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Dave S MenaldinoDepartment of Chemistry, Emory University, Atlanta, GA, 30322, USA.
Yesim A TahirovicDepartment of Chemistry, Emory University, Atlanta, GA, 30322, USA.
Dennis C LiottaDepartment of Chemistry, Emory University, Atlanta, GA, 30322, USA.
Stephen F TraynelisDepartment of Pharmacology, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Hiro FurukawaWM Keck Structural Biology Laboratory, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, 11724, USA. furukawa@cshl.edu.
Cold Spring Harbor Laboratory · USEmory University · US

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Martin Fuchs · 2019 to 2026
$38.6M
Structures and reagents of NMDA receptorsR01MH085926 · NIMH · COLD SPRING HARBOR LABORATORY · PI Hiroyasu Furukawa · 2010 to 2026
$8.9M
Control of Glutamate Receptor FunctionR01NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 1998 to 2018
$3.7M
Mechanism of Action of Novel Subunit-Selective NMDA Receptor ModulatorsR01NS065371 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 2009 to 2018
$3.4M
NMDAR Mutations & Neurodevelopmental Disorder: from Mechanism to Targeted TherapyR01HD082373 · NICHD · EMORY UNIVERSITY · PI YUAN, HONGJIE · 2015 to 2025
$3.3M
Control of glutamate receptor functionR37NS036654 · NINDS · EMORY UNIVERSITY · PI TRAYNELIS, STEPHEN F · 2007 to 2013
$2.4M
STRUCTURE AND FUNCTION OF HETERO-MULTIMERIC GLUTAMATE RECEPTORSR01GM105730 · NIGMS · COLD SPRING HARBOR LABORATORY · PI FURUKAWA, HIROYASU · 2014 to 2017
$2.0M
Structural Basis of Allosteric Regulation in the NMDA ReceptorF32NS093753 · NINDS · COLD SPRING HARBOR LABORATORY · PI REGAN, MICHAEL CASEY · 2015 to 2018
$167k
NICHD NIH HHS R01 HD082373NIGMS NIH HHS P30 GM133893NIGMS NIH HHS R01 GM105730NIMH NIH HHS R01 MH085926NINDS NIH HHS F32 NS093753NINDS NIH HHS R01 NS036654NINDS NIH HHS R01 NS065371NINDS NIH HHS R37 NS036654
6 · The paper itself

Abstract

Context-dependent inhibition of N-methyl-D-aspartate (NMDA) receptors has important therapeutic implications for the treatment of neurological diseases that are associated with altered neuronal firing and signaling. This is especially true in stroke, where the proton concentration in the afflicted area can increase by an order of magnitude. A class of allosteric inhibitors, the 93-series, shows greater potency against GluN1-GluN2B NMDA receptors in such low pH environments, allowing targeted therapy only within the ischemic region. Here we map the 93-series compound binding site in the GluN1-GluN2B NMDA receptor amino terminal domain and show that the interaction of the N-alkyl group with a hydrophobic cage of the binding site is critical for pH-dependent inhibition. Mutation of residues in the hydrophobic cage alters pH-dependent potency, and remarkably, can convert inhibitors into potentiators. Our study provides a foundation for the development of highly specific neuroprotective compounds for the treatment of neurological diseases.

Indexed as

AnimalsBinding SitesCrystallography, X-RayHEK293 CellsHumansHydrogen-Ion ConcentrationMutagenesis, Site-DirectedNeuroprotective AgentsOocytesPatch-Clamp TechniquesPropanolaminesRatsReceptors, N-Methyl-D-AspartateXenopus laevisNeuroprotective AgentsPropanolaminesReceptors, N-Methyl-D-Aspartate

Identifiers

PMID30659174
PMCPMC6338780
OpenAlexW2911004058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.