Evidence map›Paper›PMID 30658985›Full record

ArticleDevelopment (Cambridge, England)2019

Heterogeneity of transposon expression and activation of the repressive network in human fetal germ cells.

Boris Reznik, Steven A Cincotta, Rebecca G Jaszczak, Leslie J Mateo, Joel Shen, Mei Cao, Laurence Baskin, Ping Ye, Wenfeng An, Diana J Laird

Open access · greenAbstract read
In one paragraph

Article in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
5.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Review
  3. RNA mCellular and molecular life sciences : CMLS · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. To Be or Not to Be a Germ Cell: The Extragonadal Germ Cell Tumor Paradigm.International journal of molecular sciences · 2021
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Heterogeneity of primordial germ cells.Current topics in developmental biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Boris ReznikDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, CA 94143, USA.
Steven A CincottaDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, CA 94143, USA.
Rebecca G JaszczakDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, CA 94143, USA.
Leslie J MateoDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, CA 94143, USA.
Joel ShenDepartment of Urology, University of California, San Francisco, San Francisco, CA 94143, USA.
Mei CaoDepartment of Urology, University of California, San Francisco, San Francisco, CA 94143, USA.
Laurence BaskinDepartment of Urology, University of California, San Francisco, San Francisco, CA 94143, USA.
Ping YeAvera McKennan Hospital and University Health Center, Sioux Falls, SD 57105, USA.
Wenfeng AnDepartment of Pharmaceutical Sciences, South Dakota State University, Brookings, SD 57007, USA.
Diana J LairdDepartment of Obstetrics, Gynecology and Reproductive Science; Center for Reproductive Sciences; Eli and Edythe Broad Center for Regeneration Medicine and Stem Cell Research, Center for Reproductive Sciences, University of California, San Francisco, San Francisco, CA 94143, USA diana.laird@ucsf.edu.ORCID 0000-0002-4930-0560
University of California, San Francisco · USSouth Dakota State University · US

Funding

PREDOCTORAL TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007470 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Todd Nystul · 1994 to 2026
$7.7M
UCSF KURe Career Development ProgramK12DK083021 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BASKIN, LAURENCE, CARROLL, PETER R · 2008 to 2017
$5.9M
REPRODUCTIVE ENDOCRINOLOGYT32HD007263 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MELLON, SYNTHIA H · 1985 to 2023
$4.1M
Fmr1 Function and Repeat Expansion in the Developing GermlineR01GM122902 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAIRD, DIANA J · 2018 to 2021
$1.8M
The intersection of stress and environmental chemicals in germ cell reprogrammingR01ES028212 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAIRD, DIANA J · 2017 to 2021
$1.7M
Assessing transgenerational effects of Phthalates on primordial germ cellsR21ES023297 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LAIRD, DIANA J · 2013 to 2015
$944k
Investigating an Etiological Role of LINE-1 Retrotransposition in Birth DefectsR21HD080143 · NICHD · SOUTH DAKOTA STATE UNIVERSITY · PI AN, WENFENG · 2015 to 2016
$400k
Novel Transgenic Mouse Models for L1 Retrotransposons in Development and DiseaseR21OD017965 · OD · SOUTH DAKOTA STATE UNIVERSITY · PI AN, WENFENG · 2015 to 2016
$393k
Migration as a Selection Paradigm for Primordial Germ CellsF31HD096840 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JASZCZAK, REBECCA GARRETT · 2018 to 2020
$118k
NICHD NIH HHS F31 HD096840NICHD NIH HHS R21 HD080143NICHD NIH HHS T32 HD007263NICHD NIH HHS T32 HD007470NIDDK NIH HHS K12 DK083021NIEHS NIH HHS R01 ES028212NIEHS NIH HHS R21 ES023297NIGMS NIH HHS R01 GM122902NIH HHS R21 OD017965
6 · The paper itself

Abstract

Epigenetic resetting in germ cells during development de-represses transposable elements (TEs). piRNAs protect fetal germ cells by targeted mRNA destruction and deposition of repressive epigenetic marks. Here, we provide the first evidence for an active piRNA pathway and TE repression in germ cells of human fetal testis. We identify pre-pachytene piRNAs with features of secondary amplification that map most abundantly to the long interspersed element type 1 (L1) family of TEs. L1-ORF1p expression is heterogeneous in fetal germ cells, peaks at mid-gestation and declines concomitantly with increases in piRNAs, nuclear localization of HIWI2 and an increase in H3K9me3. Surprisingly, the same cells with accumulation of L1-ORF1p display highest levels of HIWI2 and H3K9me3. Conversely, the earliest germ cells with high levels of L1-ORF1p express low levels of the chaperone HSP90α. We propose that a subset of germ cells resists L1 expression, whereas L1-expressing germ cells activate the repression pathway that leads to epigenetic silencing of L1 via H3K9me3.

Indexed as

DNA Transposable ElementsGene Expression Regulation, DevelopmentalAnimalsArgonaute ProteinsCell NucleusCluster AnalysisEpigenesis, GeneticGene Expression ProfilingGene SilencingGerm CellsHeterograftsHistonesHomozygoteHSP90 Heat-Shock ProteinsHumansMaleArgonaute ProteinsDNA Transposable ElementsECAT11 protein, mouseHistonesHSP90AA2P protein, humanHSP90 Heat-Shock ProteinsL1 ORF1 protein, humanMolecular ChaperonesPIWIL1 protein, humanPIWIL4 protein, humanProteinsRibonucleoproteinsRNA-Binding ProteinsRNA, MessengerRNA, Small InterferingEpigenetic reprogrammingHuman fetal germ cellsLINE-1piRNAPIWITransposon

Identifiers

PMID30658985
PMCPMC6602354
OpenAlexW2953152325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.