Evidence map›Paper›PMID 30657786›Full record

ArticlePloS one2019

Cloning and expression of selected ABC transporters from the Arabidopsis thaliana ABCG family in Pichia pastoris.

Katharina Gräfe, Kalpana Shanmugarajah, Thomas Zobel, Stefanie Weidtkamp-Peters, Diana Kleinschrodt, Sander H J Smits, Lutz Schmitt

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Inventory of ATP-binding cassette proteins in Lithospermum erythrorhizon as a model plant producing divergent secondary metabolites.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katharina GräfeInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Kalpana ShanmugarajahInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Thomas ZobelCenter for Advanced Imaging, Heinrich Heine University, Duüsseldorf, Germany.
Stefanie Weidtkamp-PetersCenter for Advanced Imaging, Heinrich Heine University, Duüsseldorf, Germany.
Diana KleinschrodtInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Sander H J SmitsInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.
Lutz SchmittInstitute of Biochemistry, Heinrich Heine University, Düsseldorf, Germany.ORCID 0000-0002-1167-9819
Heinrich Heine University Düsseldorf · DECluster of Excellence on Plant Sciences · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytohormones play a major role in plant growth and development. They are in most cases not synthesized in their target location and hence need to be transported to the site of action, by for instance ATP-binding cassette transporters. Within the ATP-binding cassette transporter family, Pleiotropic Drug Resistance transporters are known to be involved in phytohormone transport. Interestingly, PDRs are only present in plants and fungi. In contrast to fungi, there are few biochemical studies of plant PDRs and one major reason is that suitable overexpression systems have not been identified. In this study, we evaluate the expression system Pichia pastoris for heterologous overexpression of PDR genes of the model plant Arabidopsis thaliana. We successfully cloned and expressed the potential phytohormone transporters PDR2 and PDR8 in P. pastoris. Sucrose gradient centrifugation confirmed that the overexpressed proteins were correctly targeted to the plasma membrane of P. pastoris and initial functional studies demonstrated ATPase activity for WBC1. However, difficulties in cloning and heterologous overexpression might be particular obstacles of the PDR family, since cloning and overexpression of White Brown Complex 1, a half-size transporter of the same ABCG subfamily with comparable domain organization, was more easily achieved. We present strategies and highlight critical factors to successfully clone plant PDR genes and heterologously expressed in P. pastoris.

Indexed as

Arabidopsis ProteinsATP-Binding Cassette TransportersCloning, MolecularGene ExpressionArabidopsisPichiaRecombinant ProteinsArabidopsis ProteinsATP-Binding Cassette TransportersRecombinant Proteins

Identifiers

PMID30657786
PMCPMC6338384
OpenAlexW2911219180

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.