Evidence map›Paper›PMID 30656939›Full record

ArticleAnalytical chemistry2019

DNA-Barcoded pMHC Tetramers for Detection of Single Antigen-Specific T Cells by Digital PCR.

Shreyas N Dahotre, Yun Min Chang, Anna M Romanov, Gabriel A Kwong

Abstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shreyas N DahotreWallace H. Coulter Department of Biomedical Engineering , Georgia Tech and Emory School of Medicine , Atlanta , Georgia 30332 , United States.
Yun Min ChangWallace H. Coulter Department of Biomedical Engineering , Georgia Tech and Emory School of Medicine , Atlanta , Georgia 30332 , United States.
Anna M RomanovWallace H. Coulter Department of Biomedical Engineering , Georgia Tech and Emory School of Medicine , Atlanta , Georgia 30332 , United States.
Gabriel A KwongWallace H. Coulter Department of Biomedical Engineering , Georgia Tech and Emory School of Medicine , Atlanta , Georgia 30332 , United States.ORCID 0000-0002-6255-6755

Funding

Implementing a Maternal health and PRegnancy Outcomes Vision for Everyone (IMPROVE)UL1TR002378 · NCATS · EMORY UNIVERSITY · PI Andres J Garcia, Elizabeth O. Ofili · 2017 to 2026
$92.1M
Atlanta Clinical and Translational Science Institute (ACTSI) RenewalUL1TR000454 · NCATS · EMORY UNIVERSITY · PI STEPHENS, DAVID S · 2012 to 2016
$25.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM008169 · NIGMS · EMORY UNIVERSITY · PI GROSS, ROBERT E · 1987 to 2021
$20.3M
Noninvasive and predictive biomarkers of organ transplant rejectionDP2HD091793 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI KWONG, GABRIEL A · 2016 to 2016
$2.4M
NCATS NIH HHS UL1 TR000454NCATS NIH HHS UL1 TR002378NICHD NIH HHS DP2 HD091793NIGMS NIH HHS T32 GM008169
6 · The paper itself

Abstract

Antigen-specific T cells are found at low frequencies in circulation but carry important diagnostic information as liquid biomarkers in numerous biomedical settings, such as monitoring the efficacy of vaccines and cancer immunotherapies. To enable detection of antigen-specific T cells with high sensitivity, we develop peptide-MHC (pMHC) tetramers labeled with DNA barcodes to detect single T cells by droplet digital PCR (ddPCR). We show that site-specific conjugation of DNA via photocleavable linkers allows barcoded tetramers to stain T cells with similar avidity compared to conventional fluorescent tetramers and efficient recovery of barcodes by light with no loss in cell viability. We design an orthogonal panel of DNA-barcoded tetramers to simultaneously detect multiple antigen-specific T cell populations, including from a mouse model of viral infection, and discriminate single cancer-specific T cells with high diagnostic sensitivity and specificity. This approach of DNA-barcoding can be broadened to encompass additional rare cells for monitoring immunological health at the single cell level.

Indexed as

AnimalsAntigens, ViralCarbocyaninesCell SeparationDNAFemaleFluorescent DyesHLA-A2 AntigenLymphocytic choriomeningitis virusMice, Inbred C57BLMice, TransgenicPeptidesPolymerase Chain ReactionStaining and LabelingT-LymphocytesUltraviolet RaysAntigens, ViralCarbocyaninescyanine dye 5DNAFluorescent DyesHLA-A2 AntigenPeptides

Identifiers

PMID30656939
PMCPMC6399736

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.