Evidence map›Paper›PMID 30655622›Full record

ArticleScientific reports2019

The impact of cigarette smoke exposure, COPD, or asthma status on ABC transporter gene expression in human airway epithelial cells.

Jennifer A Aguiar, Andrea Tamminga, Briallen Lobb, Ryan D Huff, Jenny P Nguyen, Yechan Kim, Anna Dvorkin-Gheva, Martin R Stampfli, Andrew C Doxey, Jeremy A Hirota

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Inhibition of ABCC1 Decreases cAMP Egress and Promotes Human Airway Smooth Muscle Cell Relaxation.American journal of respiratory cell and molecular biology · 2022
    Article
  17. Opening up to cAMP Transport Mechanisms in Airway Smooth Muscle.American journal of respiratory cell and molecular biology · 2022
    Article
  18. Article
  19. Article
  20. Bioinformatic Analysis ofMembranes · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Jennifer A AguiarDepartment of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.ORCID 0000-0003-2909-3362
Andrea TammingaDepartment of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Briallen LobbDepartment of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Ryan D HuffDivision of Respiratory Medicine, Department of Medicine, University of British Columbia, Vancouver, BC, V6H 3Z6, Canada.
Jenny P NguyenFirestone Institute for Respiratory Health - Division of Respirology, Department of Medicine, McMaster University, Hamilton, ON, L8N 4A6, Canada.
Yechan KimFirestone Institute for Respiratory Health - Division of Respirology, Department of Medicine, McMaster University, Hamilton, ON, L8N 4A6, Canada.
Anna Dvorkin-GhevaMcMaster Immunology Research Centre, McMaster University, Hamilton, ON, L8S 4K1, Canada.
Martin R StampfliFirestone Institute for Respiratory Health - Division of Respirology, Department of Medicine, McMaster University, Hamilton, ON, L8N 4A6, Canada.
Andrew C DoxeyDepartment of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
Jeremy A HirotaDepartment of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada. hirotaja@mcmaster.ca.ORCID 0000-0003-2429-4165
McMaster University · CAUniversity of Waterloo · CAUniversity of British Columbia · CA

Funding

CIHR
6 · The paper itself

Abstract

ABC transporters are conserved in prokaryotes and eukaryotes, with humans expressing 48 transporters divided into 7 classes (ABCA, ABCB, ABCC, ABCD, ABDE, ABCF, and ABCG). Throughout the human body, ABC transporters regulate cAMP levels, chloride secretion, lipid transport, and anti-oxidant responses. We used a bioinformatic approach complemented with in vitro experimental methods for validation of the 48 known human ABC transporters in airway epithelial cells using bronchial epithelial cell gene expression datasets available in NCBI GEO from well-characterized patient populations of healthy subjects and individuals that smoke cigarettes, or have been diagnosed with COPD or asthma, with validation performed in Calu-3 airway epithelial cells. Gene expression data demonstrate that ABC transporters are variably expressed in epithelial cells from different airway generations, regulated by cigarette smoke exposure (ABCA13, ABCB6, ABCC1, and ABCC3), and differentially expressed in individuals with COPD and asthma (ABCA13, ABCC1, ABCC2, ABCC9). An in vitro cell culture model of cigarette smoke exposure was able to recapitulate select observed in situ changes. Our work highlights select ABC transporter candidates of interest and a relevant in vitro model that will enable a deeper understanding of the contribution of ABC transporters in the respiratory mucosa in lung health and disease.

Indexed as

AsthmaATP-Binding Cassette TransportersCell Line, TumorComputational BiologyDatasets as TopicEpithelial CellsGene ExpressionHumansMultidrug Resistance-Associated Protein 2Pulmonary Disease, Chronic ObstructiveRespiratory SystemTobacco Smoke PollutionABCC2 protein, humanATP-Binding Cassette TransportersMultidrug Resistance-Associated Protein 2Tobacco Smoke Pollution

Identifiers

PMID30655622
PMCPMC6336805
OpenAlexW2952622820

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.