Evidence map›Paper›PMID 30655598›Full record

ReviewGenetics in medicine : official journal of the American College of Medical Genetics2019

Insights into genetics, human biology and disease gleaned from family based genomic studies.

Jennifer E Posey, Anne H O'Donnell-Luria, Jessica X Chong, Tamar Harel, Shalini N Jhangiani, Zeynep H Coban Akdemir, Steven Buyske, Davut Pehlivan, Claudia M B Carvalho, Samantha Baxter and 27 more

Open access · bronzeAbstract readReview
In one paragraph

Review in Genetics in medicine : official journal of the American College of Medical Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 131 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
131citing papers in PubMed, 1 pooled it
25.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

131 citing papers in PubMed, 1 synthesis or guideline pooled it, 211 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Expanding the Clinical and Molecular Spectrum ofmedRxiv : the preprint server for health sciences · 2025
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  7. Review
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  11. Article
  12. Evaluation and Aggregation of Active Module Identification Algorithms.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Automated Shared Phenotype Discovery in Undiagnosed Cohorts for Rare Disease Research.Proceedings of the ... International Conference on Machine Learning and Applications. International Conference on Machine Learning and Applications · 2024
    Article
  19. Loss-of-function in RBBP5 results in a syndromic neurodevelopmental disorder associated with microcephaly.Genetics in medicine : official journal of the American College of Medical Genetics · 2024
    Article
  20. Article

71 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 11 institutions in 3 countries.

Jennifer E PoseyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. jennifer.posey@bcm.edu.
Anne H O'Donnell-LuriaAnalytic and Translational Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.
Jessica X ChongDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
Tamar HarelDepartment of Genetic and Metabolic Diseases, Hadassah-Hebrew University Medical Center, Jerusalem, Israel.
Shalini N JhangianiThe Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Zeynep H Coban AkdemirDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Steven BuyskeDepartment of Genetics, Rutgers University, Piscataway, NJ, USA.
Davut PehlivanDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Claudia M B CarvalhoDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Samantha BaxterProgram in Medical and Population Genetics, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Nara SobreiraMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Pengfei LiuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Nan WuDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Jill A RosenfeldDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Sushant KumarComputational Biology and Bioinformatics Program, Yale University Medical School, New Haven, CT, USA.
Dimitri AvramopoulosMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Janson J WhiteDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Kimberly F DohenyMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
P Dane WitmerMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Corinne BoehmMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
V Reid SuttonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Donna M MuznyThe Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Eric BoerwinkleThe Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Murat GünelDepartment of Neurosurgery, Yale School of Medicine, New Haven, CT, USA.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Shrikant ManeYale Center for Genome Analysis, Yale School of Medicine, Yale University, New Haven, CT, USA.
Daniel G MacArthurAnalytic and Translational Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA.
Ada HamoshMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Richard P LiftonDepartment of Neurosurgery, Yale School of Medicine, New Haven, CT, USA.
Tara C MatiseDepartment of Genetics, Rutgers University, Piscataway, NJ, USA.
Heidi L RehmAnalytic and Translational Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.
Mark GersteinComputational Biology and Bioinformatics Program, Yale University Medical School, New Haven, CT, USA.
Michael J BamshadDepartment of Pediatrics, University of Washington, Seattle, WA, USA.
David ValleMcKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, USA. jlupski@bcm.edu.
Centers for Mendelian Genomics
Baylor College of Medicine · USJohns Hopkins University · USYale University · USBroad Institute · USUniversity of Washington · USRutgers, The State University of New Jersey · USBaylor Genetics · USChinese Academy of Medical Sciences & Peking Union Medical College · CNHadassah Medical Center · ILJohns Hopkins Medicine · USThe University of Texas Health Science Center at Houston · US

Funding

Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
UW Center for Mendelian GenomicsUM1HG006493 · NHGRI · UNIVERSITY OF WASHINGTON · PI BAMSHAD, MICHAEL JOSEPH, LEAL, SUZANNE M · 2016 to 2020
$15.3M
Yale Center for Mendelian GenomicsUM1HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2016 to 2020
$14.8M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Sleep and Circadian Dysfunction, Brain and Neurobehavioral Development in AutismP50HD103538 · NICHD · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI Stewart H Mostofsky · 2020 to 2026
$9.9M
The Child Heath Research CenterK12HD052896 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Wendy K Chung · 2007 to 2026
$7.9M
PROGRAM IN HUMAN MOLECULAR GENETICST32GM008307 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI SHAULSKY, GAD · 1990 to 2020
$6.6M
STRUCTURAL VARIATION IN NEUROLOGICAL DISEASER35NS105078 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 2018 to 2025
$6.0M
NHGRI Genome Sequencing Program Coordinating CenterU24HG008956 · NHGRI · RUTGERS, THE STATE UNIV OF N.J. · PI BUYSKE, STEVEN G, MATISE, TARA C. · 2016 to 2020
$4.9M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
Individual genomic analyses to discover the molecular basis and mechanisms contributing to adult-onset diseaseK08HG008986 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI POSEY, JENNIFER ELLEN · 2017 to 2021
$831k
Discovery and functional characterization of genic variants leading to Robinow syndrome and related skeletal dysplasias.R03HD092569 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI FONSECA, CLAUDIA CARVALHO, SUTTON, VERNON R · 2018 to 2019
$238k
NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U24 HG008956NHGRI NIH HHS UM1 HG006493NHGRI NIH HHS UM1 HG006504NHGRI NIH HHS UM1 HG006542NHGRI NIH HHS UM1 HG008900NICHD NIH HHS K12 HD052896NICHD NIH HHS P50 HD103538NICHD NIH HHS R03 HD092569NIGMS NIH HHS T32 GM008307NIH HHS S10 OD018521NINDS NIH HHS R35 NS105078
6 · The paper itself

Abstract

Identifying genes and variants contributing to rare disease phenotypes and Mendelian conditions informs biology and medicine, yet potential phenotypic consequences for variation of >75% of the ~20,000 annotated genes in the human genome are lacking. Technical advances to assess rare variation genome-wide, particularly exome sequencing (ES), enabled establishment in the United States of the National Institutes of Health (NIH)-supported Centers for Mendelian Genomics (CMGs) and have facilitated collaborative studies resulting in novel "disease gene" discoveries. Pedigree-based genomic studies and rare variant analyses in families with suspected Mendelian conditions have led to the elucidation of hundreds of novel disease genes and highlighted the impact of de novo mutational events, somatic variation underlying nononcologic traits, incompletely penetrant alleles, phenotypes with high locus heterogeneity, and multilocus pathogenic variation. Herein, we highlight CMG collaborative discoveries that have contributed to understanding both rare and common diseases and discuss opportunities for future discovery in single-locus Mendelian disorder genomics. Phenotypic annotation of all human genes; development of bioinformatic tools and analytic methods; exploration of non-Mendelian modes of inheritance including reduced penetrance, multilocus variation, and oligogenic inheritance; construction of allelic series at a locus; enhanced data sharing worldwide; and integration with clinical genomics are explored. Realizing the full contribution of rare disease research to functional annotation of the human genome, and further illuminating human biology and health, will lay the foundation for the Precision Medicine Initiative.

Indexed as

Genetic HeterogeneityDatabases, GeneticExome SequencingGenetic Diseases, InbornGenetic Predisposition to DiseaseGenome, HumanGenomicsHumansNational Institutes of Health (U.S.)PedigreeUnited StatesCenters for Mendelian Genomics (CMG)disease traitsgenetic models for diseaseMendelian conditionsrare variant phenotypes

Identifiers

PMID30655598
PMCPMC6691975
OpenAlexW2911161668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.