Evidence map›Paper›PMID 30655572›Full record

ArticleJournal of human genetics2019

Identification of de novo CSNK2A1 and CSNK2B variants in cases of global developmental delay with seizures.

Mitsuko Nakashima, Jun Tohyama, Eiji Nakagawa, Yoshihiro Watanabe, Ch'ng Gaik Siew, Chieng Siik Kwong, Kaori Yamoto, Takuya Hiraide, Tokiko Fukuda, Tadashi Kaname and 5 more

Abstract read
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In one paragraph

Article in Journal of human genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed, 3 pooled it
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 3 syntheses or guidelines pooled it, 70 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Identification of novelThe Journal of international medical research · 2021
    Pooled it
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Further Delineation of the AUTS2 HX Repeat Domain-Related Phenotype.American journal of medical genetics. Part A · 2025
    Article
  10. Article
  11. CSNK2B Mutation: A Rare Cause of IGHD.Clinical endocrinology · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
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  17. Review
  18. Article
  19. Essential requirement for IER3IP1 in B cell development.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 9 institutions in 2 countries.

Mitsuko NakashimaDepartment of Biochemistry, Hamamatsu University School of Medicine, Hamamatsu, Japan. mnakashi@hama-med.ac.jp.ORCID http://orcid.org/0000-0001-7941-1774
Jun TohyamaDepartment of Child Neurology, Nishi-Niigata Chuo National Hospital, Niigata, Japan.
Eiji NakagawaDepartment of Child Neurology, National Center Hospital, National Center of Neurology and Psychiatry, Tokyo, Japan.
Yoshihiro WatanabeDepartment of Pediatrics, Yokohama City University Medical Center, Yokohama, Japan.
Ch'ng Gaik SiewDepartment of Genetics, Kuala Lumpur Hospital, Kuala Lumpur, Malaysia.
Chieng Siik KwongDepartment of Pediatrics, Sarawak General Hospital, Sarawak, Malaysia.
Kaori YamotoDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Takuya HiraideDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Tokiko FukudaDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Tadashi KanameDepartment of Genome Medicine, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0003-0281-9610
Kazuhiko NakabayashiDepartment of Maternal-Fetal Biology, National Research Institute for Child Health and Development, Tokyo, Japan.ORCID http://orcid.org/0000-0003-2927-0963
Kenichiro HataDepartment of Maternal-Fetal Biology, National Research Institute for Child Health and Development, Tokyo, Japan.
Tsutomu OgataDepartment of Pediatrics, Hamamatsu University School of Medicine, Hamamatsu, Japan.
Hirotomo SaitsuDepartment of Biochemistry, Hamamatsu University School of Medicine, Hamamatsu, Japan.ORCID http://orcid.org/0000-0003-0723-0960
Naomichi MatsumotoDepartment of Human Genetics, Yokohama City University Graduate School of Medicine, Yokohama, Japan. naomat@yokohama-cu.ac.jp.
Hamamatsu University School of Medicine · JPNational Center For Child Health and Development · JPHamamatsu University · JPHospital Kuala Lumpur · MYNational Center of Neurology and Psychiatry · JPNishi Niigata Chuo National Hospital · JPSarawak General Hospital · MYYokohama City University · JPYokohama City University Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Casein kinase 2 (CK2) is a serine threonine kinase ubiquitously expressed in eukaryotic cells and involved in various cellular processes. In recent studies, de novo variants in CSNK2A1 and CSNK2B, which encode the subunits of CK2, have been identified in individuals with intellectual disability syndrome. In this study, we describe four patients with neurodevelopmental disorders possessing de novo variants in CSNK2A1 or CSNK2B. Using whole-exome sequencing, we detected two de novo variants in CSNK2A1 in two unrelated Japanese patients, a novel variant c.571C>T, p.(Arg191*) and a recurrent variant c.593A>G, p.(Lys198Arg), and two novel de novo variants in CSNK2B in Japanese and Malaysian patients, c.494A>G, p.(His165Arg) and c.533_534insGT, p.(Pro179Tyrfs*49), respectively. All four patients showed mild to profound intellectual disabilities, developmental delays, and various types of seizures. This and previous studies have found a total of 20 CSNK2A1 variants in 28 individuals with syndromic intellectual disability. The hotspot variant c.593A>G, p.(Lys198Arg) was found in eight of 28 patients. Meanwhile, only five CSNK2B variants were identified in five individuals with neurodevelopmental disorders. We reviewed the previous literature to verify the phenotypic spectrum of CSNK2A1- and CSNK2B-related syndromes.

Indexed as

AdolescentCasein Kinase IIChildChild, PreschoolDevelopmental DisabilitiesExome SequencingFemaleHumansInfantIntellectual DisabilityMaleMutationNeurodevelopmental DisordersPedigreeSeizuresCasein Kinase IICSNK2A1 protein, human

Identifiers

PMID30655572
OpenAlexW2910715775

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.