Evidence map›Paper›PMID 30655344›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships.

Patrice S Albert, Tao Zhang, Kassandra Semrau, Jean-Marie Rouillard, Yu-Hsin Kao, Chung-Ju Rachel Wang, Tatiana V Danilova, Jiming Jiang, James A Birchler

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
20.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 113 citations in OpenAlex.

  1. Chromosome painting in plants: history and future perspectives.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2026
    Review
  2. Article
  3. Article
  4. Recreating viable YYNature communications · 2026
    Article
  5. Article
  6. OligoY pipeline for full Y chromosome painting.Briefings in bioinformatics · 2025
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Utilization of theMolecular breeding : new strategies in plant improvement · 2024
    Review
  14. Article
  15. Divergence of 10 satellite repeats in Artemisia (Asteraceae: Anthemideae) based on sequential fluorescence in situ hybridization analysis: evidence for species identification and evolution.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Patrice S AlbertDivision of Biological Sciences, University of Missouri, Columbia, MO 65211.
Tao ZhangDepartment of Horticulture, University of Wisconsin-Madison, Madison, WI 53706.ORCID 0000-0002-7897-0205
Kassandra SemrauArbor Biosciences, Ann Arbor, MI 48103.
Jean-Marie RouillardArbor Biosciences, Ann Arbor, MI 48103.
Yu-Hsin KaoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.
Chung-Ju Rachel WangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei 11529, Taiwan.ORCID 0000-0002-1046-3012
Tatiana V DanilovaDivision of Biological Sciences, University of Missouri, Columbia, MO 65211.
Jiming JiangDepartment of Horticulture, University of Wisconsin-Madison, Madison, WI 53706.
James A BirchlerDivision of Biological Sciences, University of Missouri, Columbia, MO 65211; birchlerj@missouri.edu.
University of Missouri · USInstitute of Plant and Microbial Biology, Academia Sinica · TWUniversity of Wisconsin–Madison · USAastrom Biosciences (United States) · USUniversity of Michigan · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Whole-chromosome painting probes were developed for each of the 10 chromosomes of maize by producing amplifiable libraries of unique sequences of oligonucleotides that can generate labeled probes through transcription reactions. These paints allow identification of individual homologous chromosomes for many applications as demonstrated in somatic root tip metaphase cells, in the pachytene stage of meiosis, and in interphase nuclei. Several chromosomal aberrations were examined as proof of concept for study of various rearrangements using probes that cover the entire chromosome and that label diverse varieties. The relationship of the supernumerary B chromosome and the normal chromosomes was examined with the finding that there is no detectable homology between any of the normal A chromosomes and the B chromosome. Combined with other chromosome-labeling techniques, a complete set of whole-chromosome oligonucleotide paints lays the foundation for future studies of the structure, organization, and evolution of genomes.

Indexed as

Cell NucleusChromosome AberrationsChromosome PaintingChromosomes, PlantDNA ProbesGene RearrangementGenome, PlantMetaphaseOligonucleotidesTranscription, GeneticDNA ProbesOligonucleotidesB chromosomechromosomal aberrationschromosome paintingkaryotypeoligo-FISH

Identifiers

PMID30655344
PMCPMC6358699
OpenAlexW2911182271

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.