Evidence map›Paper›PMID 30655312›Full record

ArticleJournal of the American Society of Nephrology : JASN2019

Whole-Exome Sequencing Enables a Precision Medicine Approach for Kidney Transplant Recipients.

Nina Mann, Daniela A Braun, Kassaundra Amann, Weizhen Tan, Shirlee Shril, Dervla M Connaughton, Makiko Nakayama, Ronen Schneider, Thomas M Kitzler, Amelie T van der Ven and 25 more

Abstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Diagnosis, management and treatment of the Alport syndrome - 2024 guideline on behalf of ERKNet, ERA and ESPN.Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association · 2025
    Guideline
  2. Guideline
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. HomozygousRenal failure · 2025
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Trio exome sequencing identifies de novo variants in novel candidate genes in 19.62% of CAKUT families.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  17. Review
  18. Article
  19. Evaluation for genetic disease in kidney transplant candidates: A practice resource.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2025
    Review
  20. Natural History and Clinicopathological Associations of TRPC6-Associated Podocytopathy.Journal of the American Society of Nephrology : JASN · 2025
    Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

Nina MannDivision of Nephrology.
Daniela A BraunDivision of Nephrology.
Kassaundra AmannDivision of Nephrology.
Weizhen TanDivision of Nephrology.
Shirlee ShrilDivision of Nephrology.
Dervla M ConnaughtonDivision of Nephrology.
Makiko NakayamaDivision of Nephrology.
Ronen SchneiderDivision of Nephrology.
Thomas M KitzlerDivision of Nephrology.
Amelie T van der VenDivision of Nephrology.
Jing ChenDivision of Nephrology.
Hadas ItyelDivision of Nephrology.
Asaf VivanteDivision of Nephrology.
Amar J MajmundarDivision of Nephrology.
Ankana DagaDivision of Nephrology.
Jillian K WarejkoDivision of Nephrology.
Svjetlana LovricDivision of Nephrology.
Shazia AshrafDivision of Nephrology.
Tilman Jobst-SchwanDivision of Nephrology.
Eugen WidmeierDivision of Nephrology.
Hannah HugoDivision of Nephrology.
Shrikant M ManeDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut; and.
Leslie SpaneasDivision of Nephrology.
Michael J G SomersDivision of Nephrology.
Michael A FergusonDivision of Nephrology.
Avram Z TraumDivision of Nephrology.
Deborah R SteinDivision of Nephrology.
Michelle A BaumDivision of Nephrology.
Ghaleb H DaoukDivision of Nephrology.
Richard P LiftonDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut; and.
Shannon ManziDepartment of Genetics and Genomics, Department of Pharmacy, and.
Khashayar VakiliDepartment of Surgery, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Heung Bae KimDepartment of Surgery, Boston Children's Hospital, Harvard Medical School, Boston, Massachusetts.
Nancy M RodigDivision of Nephrology, friedhelm.hildebrandt@childrens.harvard.edu nancy.rodig@childrens.harvard.edu.
Friedhelm HildebrandtDivision of Nephrology, friedhelm.hildebrandt@childrens.harvard.edu nancy.rodig@childrens.harvard.edu.

Funding

Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI SOMLO, STEFAN · 2008 to 2022
$16.8M
Joint Center for Mendelian GenomicsUM1HG008900 · NHGRI · BROAD INSTITUTE, INC. · PI O'DONNELL-LURIA, ANNE, REHM, HEIDI L · 2016 to 2020
$16.5M
Yale Center for Mendelian DisordersU54HG006504 · NHGRI · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER, GUNEL, MURAT · 2012 to 2015
$11.0M
Novel genetics, pathobiology & therapy of nephronophthisis-related ciliopathiesR01DK068306 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2004 to 2022
$6.6M
RESEARCH TRAINING IN PEDIATRIC NEPHROLOGYT32DK007726 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI BRISCOE, DAVID M. · 1994 to 2023
$5.9M
Identification and function of new genes causing childhood nephrotic syndromeR01DK076683 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2007 to 2021
$5.3M
New genes and pathomechanisms of congenital abnormalities of the kidney (CAKUT)R01DK088767 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HILDEBRANDT, FRIEDHELM · 2010 to 2019
$3.4M
High Performance Computing Instrumentation for the Yale Center for Genome AnalysiS10OD018521 · OD · YALE UNIVERSITY · PI MANE, SHRIKANT M · 2015 to 2015
$890k
NHGRI NIH HHS U54 HG006504NHGRI NIH HHS UM1 HG008900NIDDK NIH HHS P30 DK079310NIDDK NIH HHS R01 DK068306NIDDK NIH HHS R01 DK076683NIDDK NIH HHS R01 DK088767NIDDK NIH HHS T32 DK007726NIH HHS S10 OD018521
6 · The paper itself

Abstract

backgroundWhole-exome sequencing (WES) finds a CKD-related mutation in approximately 20% of patients presenting with CKD before 25 years of age. Although provision of a molecular diagnosis could have important implications for clinical management, evidence is lacking on the diagnostic yield and clinical utility of WES for pediatric renal transplant recipients.

methodsTo determine the diagnostic yield of WES in pediatric kidney transplant recipients, we recruited 104 patients who had received a transplant at Boston Children's Hospital from 2007 through 2017, performed WES, and analyzed results for likely deleterious variants in approximately 400 genes known to cause CKD.

resultsBy WES, we identified a genetic cause of CKD in 34 out of 104 (32.7%) transplant recipients. The likelihood of detecting a molecular genetic diagnosis was highest for patients with urinary stone disease (three out of three individuals), followed by renal cystic ciliopathies (seven out of nine individuals), steroid-resistant nephrotic syndrome (nine out of 21 individuals), congenital anomalies of the kidney and urinary tract (ten out of 55 individuals), and chronic glomerulonephritis (one out of seven individuals). WES also yielded a molecular diagnosis for four out of nine individuals with ESRD of unknown etiology. The WES-related molecular genetic diagnosis had implications for clinical care for five patients.

conclusionsNearly one third of pediatric renal transplant recipients had a genetic cause of their kidney disease identified by WES. Knowledge of this genetic information can help guide management of both transplant patients and potential living related donors.

Indexed as

AdolescentBostonChildChild, PreschoolCohort StudiesExome SequencingFemaleGenetic Predisposition to DiseaseGenetic TestingGraft RejectionGraft SurvivalHospitals, PediatricHumansKidney TransplantationMalePrecision Medicinechronic kidney diseaseend-stage renal diseasegenetic renal diseasehuman geneticstransplantation

Identifiers

PMID30655312
PMCPMC6362619

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.