Evidence map›Paper›PMID 30654758›Full record

ArticleBMC genomics2019

Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp.

Michal Reichert, Anna Lukasik, Piotr Zielenkiewicz, Marek Matras, Joanna Maj-Paluch, Magdalena Stachnik, Ewa Borzym

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Michal ReichertDepartment of Fish Diseases, National Veterinary Research Institute, 57 Partyzantow Avenue, 24-100, Pulawy, Poland. reichert@piwet.pulawy.pl.
Anna LukasikInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland.
Piotr ZielenkiewiczInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawinskiego 5a, 02-106, Warsaw, Poland.
Marek MatrasDepartment of Fish Diseases, National Veterinary Research Institute, 57 Partyzantow Avenue, 24-100, Pulawy, Poland.
Joanna Maj-PaluchDepartment of Fish Diseases, National Veterinary Research Institute, 57 Partyzantow Avenue, 24-100, Pulawy, Poland.
Magdalena StachnikDepartment of Fish Diseases, National Veterinary Research Institute, 57 Partyzantow Avenue, 24-100, Pulawy, Poland.
Ewa BorzymDepartment of Fish Diseases, National Veterinary Research Institute, 57 Partyzantow Avenue, 24-100, Pulawy, Poland.
National Veterinary Research Institute · PLInstitute of Biochemistry and Biophysics, Polish Academy of Sciences · PLUniversity of Warsaw · PL

Funding

by KNOW (Leading National Research Centre) Scientific Consortium "Healthy Animal - Safe Food" 05-1/KNOW2/2015Narodowe Centrum Nauki 2013/09/B/NZ6/02409
6 · The paper itself

Abstract

backgroundThe mechanism of latency and the ability of the cyprinid herpesvirus 3 (CyHV-3) to establish life-long infections in carp remains poorly understood. To explain the role of miRNAs in this process we applied a range of molecular tools including high-throughput sequencing of RNA libraries constructed from the blood samples of infected fish followed by bioinformatic and functional analyses which show that CyHV-3 profoundly influences the expression of host miRNAs in vivo.

resultsWe demonstrated the changed expression of 27 miRNAs in the clinical phase and 5 in the latent phase of infection. We also identified 23 novel, not previously reported sequences, from which 8 showed altered expressions in control phase, 10 in clinical phase and 5 in latent phase of infection.

conclusionsThe results of our analysis expand the knowledge of common carp microRNAs engaged during CyHV-3 infection and provide a useful basis for the further study of the mechanism of CyHV-3 induced pathology.

Indexed as

AnimalsCarpsFish DiseasesGene Expression ProfilingGene OntologyHerpesviridaeHerpesviridae InfectionsHost-Pathogen InteractionsMicroRNAsMolecular Sequence AnnotationReproducibility of ResultsMicroRNAsCellular miRNA expressionCommon carpHerpesvirusInfectionKHV

Identifiers

PMID30654758
PMCPMC6337785
OpenAlexW2912797542

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.