Evidence map›Paper›PMID 30654756›Full record

ArticleBMC microbiology2019

Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France.

Guillaume Geslain, André Birgy, Sandrine Adiba, Mélanie Magnan, Céline Courroux, Corinne Levy, Robert Cohen, Philippe Bidet, Stéphane Bonacorsi

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Guillaume GeslainIAME, UMR 1137, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France.ORCID 0000-0001-5869-9908
André BirgyIAME, UMR 1137, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France.
Sandrine AdibaInstitut de Biologie de l'Ecole Normale Supérieure, Ecole Normale Supérieure, PSL Research University Paris, Paris, France.
Mélanie MagnanIAME, UMR 1137, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France.
Céline CourrouxService de Microbiologie, Centre National de Référence Escherichia coli, Hôpital Robert-Debré, AP-HP, 48 boulevard Sérurier, 75019, Paris, France.
Corinne LevyAssociation Clinique Thérapeutique Infantile du Val de Marne, Saint Maur des Fossés, France.
Robert CohenAssociation Clinique Thérapeutique Infantile du Val de Marne, Saint Maur des Fossés, France.
Philippe BidetIAME, UMR 1137, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France.
Stéphane BonacorsiIAME, UMR 1137, INSERM, Université Paris Diderot, Sorbonne Paris Cité, Paris, France. stephane.bonacorsi@aphp.fr.
Inserm · FRAssociation Clinique et Thérapeutique Infantile du Val de Marne · FRAssistance Publique – Hôpitaux de Paris · FRUniversité Paris Sciences et Lettres · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo describe the temporal dynamics, molecular characterization, clinical and ex vivo virulence of emerging O1:K1 neonatal meningitis Escherichia coli (NMEC) strains of Sequence Type complex (STc) 95 in France. The national reference center collected NMEC strains and performed whole genome sequencing (WGS) of O1:K1 STc95 NMEC strains for phylogenetic and virulence genes content analysis. Data on the clinical and biological features of patients were also collected. Ex vivo virulence was assessed using the Dictyostelium discoideum amoeba model.

resultsAmong 250 NMEC strains collected between 1998 and 2015, 38 belonged to O1:K1 STc95. This clonal complex was the most frequently collected after 2004, representing up to 25% of NMEC strains in France. Phylogenetic analysis demonstrated that most (74%) belonged to a cluster designated D-1, characterized by the adhesin FimH30. There is no clinical data to suggest that this cluster is more pathogenic than its counterparts, although it is highly predominant and harbors a large repertoire of extraintestinal virulence factors, including a pS88-like plasmid. Ex vivo virulence model showed that this cluster was generally less virulent than STc95 reference strains of O45

conclusionsThe emerging clonal group O1:K1 STc95 of NMEC strains is mainly composed of a cluster with many virulence factors but of only moderate virulence. Whether its emergence is due to its ability to colonize the gut thanks to FimH30 or pS88-like plasmid remains to be determined.

Indexed as

Whole Genome SequencingEscherichia coliFranceGenome, BacterialHumansInfant, NewbornInfant, Newborn, DiseasesMeningitis, Escherichia coliModels, GeneticPhylogenyVirulenceAmoeba modelEscherichia coliMeningitisNewbornsSequencing data analysis

Identifiers

PMID30654756
PMCPMC6337857
OpenAlexW2909517205

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.