Evidence map›Paper›PMID 30654561›Full record

ArticleGenes2019

Genomes of Three Closely Related Caribbean Amazons Provide Insight for Species History and Conservation.

Sofiia Kolchanova, Sergei Kliver, Aleksei Komissarov, Pavel Dobrinin, Gaik Tamazian, Kirill Grigorev, Walter W Wolfsberger, Audrey J Majeske, Jafet Velez-Valentin, Ricardo Valentin de la Rosa and 6 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genes, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Changes in parrot diversity after human arrival to the Caribbean.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Sofiia KolchanovaDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. sofiia.kolchanova@upr.edu.ORCID 0000-0002-1928-5486
Sergei KliverTheodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. mahajrod@gmail.com.
Aleksei KomissarovTheodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. ad3002@gmail.com.
Pavel DobrininTheodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. pdobrynin@gmail.com.
Gaik TamazianTheodosius Dobzhansky Center for Genome Bioinformatics, St. Petersburg State University, 199034 St. Petersburg, Russia. gaik.tamazian@gmail.com.
Kirill GrigorevDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. kig2007@med.cornell.edu.ORCID 0000-0003-3628-0123
Walter W WolfsbergerDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. wwolfsberger@oakland.edu.
Audrey J MajeskeDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. audrey.majeske@upr.edu.
Jafet Velez-ValentinConservation Program of the Puerto Rican Parrot, U.S. Fish and Wildlife Service, Rio Grande, PR 00745, USA. jafet_velez@fws.gov.
Ricardo Valentin de la RosaThe Recovery Program of the Puerto Rican Parrot at the Rio Abajo State Forest, Departamento de Recursos Naturales y Ambientales de Puerto Rico, Arecibo, PR 00613, USA. el.cotorro.electrico@gmail.com.
Joanne R Paul-MurphyDepartment of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, USA. paulmurphy@ucdavis.edu.
David Sanchez-Migallon GuzmanDepartment of Medicine and Epidemiology, School of Veterinary Medicine, University of California Davis, Davis, CA 95616, USA. guzman@ucdavis.edu.
Michael H CourtProgram in Individualized Medicine (PrIMe), Pharmacogenomics Laboratory, Department of Veterinary Clinical Sciences, College of Veterinary Medicine, Washington State University, 100 Grimes Way, Pullman, WA 99164, USA. michael.court@wsu.edu.
Juan L Rodriguez-FloresDepartment of Genetic Medicine, Weill Cornell Medical College, New York, NY 10021, USA. jur2014@med.cornell.edu.ORCID 0000-0002-0394-8062
Juan Carlos Martínez-CruzadoDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. juancarlos.martinez@upr.edu.ORCID 0000-0002-7413-9668
Taras K OleksykDepartment of Biology, University of Puerto Rico at Mayaguez, Mayaguez, PR 00680, USA. oleksyk@oakland.edu.ORCID 0000-0002-8148-3918

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Islands have been used as model systems for studies of speciation and extinction since Darwin published his observations about finches found on the Galapagos. Amazon parrots inhabiting the Greater Antillean Islands represent a fascinating model of species diversification. Unfortunately, many of these birds are threatened as a result of human activity and some, like the Puerto Rican parrot, are now critically endangered. In this study we used a combination of de novo and reference-assisted assembly methods, integrating it with information obtained from related genomes to perform genome reconstruction of three amazon species. First, we used whole genome sequencing data to generate a new de novo genome assembly for the Puerto Rican parrot (

Indexed as

Endangered SpeciesGenomeAnimalsIslandsParrotsTranscriptomebirdsconservationCubademographygenomicsheterozygosityHispaniolaparrotsPuerto Rican parrot

Identifiers

PMID30654561
PMCPMC6356210

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.