Evidence map›Paper›PMID 30653497›Full record

ArticlePLoS computational biology2019

STRFs in primary auditory cortex emerge from masking-based statistics of natural sounds.

Abdul-Saboor Sheikh, Nicol S Harper, Jakob Drefs, Yosef Singer, Zhenwen Dai, Richard E Turner, Jörg Lücke

Abstract read
In one paragraph

Article in PLoS computational biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Abdul-Saboor SheikhResearch Center Neurosensory Science, Cluster of Excellence Hearing4all, Department of Medical Physics and Acoustics, University of Oldenburg, Oldenburg, Germany.
Nicol S HarperInstitute of Biomedical Engineering, Department of Engineering Science, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-7851-4840
Jakob DrefsResearch Center Neurosensory Science, Cluster of Excellence Hearing4all, Department of Medical Physics and Acoustics, University of Oldenburg, Oldenburg, Germany.
Yosef SingerDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-4480-0574
Zhenwen DaiDepartment of Computer Science, University of Sheffield, Sheffield, United Kingdom.
Richard E TurnerDepartment of Engineering, University of Cambridge, Cambridge, United Kingdom.
Jörg LückeResearch Center Neurosensory Science, Cluster of Excellence Hearing4all, Department of Medical Physics and Acoustics, University of Oldenburg, Oldenburg, Germany.ORCID 0000-0001-9921-2529

Funding

Biotechnology and Biological Sciences Research Council BB/H008608/1Wellcome Trust WT076508AIAWellcome Trust WT108369/Z/2015/Z
6 · The paper itself

Abstract

We investigate how the neural processing in auditory cortex is shaped by the statistics of natural sounds. Hypothesising that auditory cortex (A1) represents the structural primitives out of which sounds are composed, we employ a statistical model to extract such components. The input to the model are cochleagrams which approximate the non-linear transformations a sound undergoes from the outer ear, through the cochlea to the auditory nerve. Cochleagram components do not superimpose linearly, but rather according to a rule which can be approximated using the max function. This is a consequence of the compression inherent in the cochleagram and the sparsity of natural sounds. Furthermore, cochleagrams do not have negative values. Cochleagrams are therefore not matched well by the assumptions of standard linear approaches such as sparse coding or ICA. We therefore consider a new encoding approach for natural sounds, which combines a model of early auditory processing with maximal causes analysis (MCA), a sparse coding model which captures both the non-linear combination rule and non-negativity of the data. An efficient truncated EM algorithm is used to fit the MCA model to cochleagram data. We characterize the generative fields (GFs) inferred by MCA with respect to in vivo neural responses in A1 by applying reverse correlation to estimate spectro-temporal receptive fields (STRFs) implied by the learned GFs. Despite the GFs being non-negative, the STRF estimates are found to contain both positive and negative subfields, where the negative subfields can be attributed to explaining away effects as captured by the applied inference method. A direct comparison with ferret A1 shows many similar forms, and the spectral and temporal modulation tuning of both ferret and model STRFs show similar ranges over the population. In summary, our model represents an alternative to linear approaches for biological auditory encoding while it captures salient data properties and links inhibitory subfields to explaining away effects.

Indexed as

Models, NeurologicalModels, StatisticalSignal Processing, Computer-AssistedAcoustic StimulationAlgorithmsAnimalsAuditory CortexCochleaFemaleFerretsHearing TestsHumansMale

Identifiers

PMID30653497
PMCPMC6382252

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.