Evidence map›Paper›PMID 30652130›Full record

ArticleCommunications biology2019

Regulation of RNA editing by RNA-binding proteins in human cells.

Giovanni Quinones-Valdez, Stephen S Tran, Hyun-Ik Jun, Jae Hoon Bahn, Ei-Wen Yang, Lijun Zhan, Anneke Brümmer, Xintao Wei, Eric L Van Nostrand, Gabriel A Pratt and 3 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 152 citations in OpenAlex.

  1. Review
  2. ACS omega · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. RNA-binding proteins connect Exon usage to the chromatin.NAR genomics and bioinformatics · 2025
    Article
  7. Review
  8. Comprehensive characterization of the RNA editing landscape in the human aging brains with Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Review

38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Giovanni Quinones-Valdez1Department of Bioengineering, University of California Los Angeles, Los Angeles, CA 90095 USA.ORCID 0000-0003-0962-8251
Stephen S Tran2Bioinformatics Interdepartmental Program, University of California Los Angeles, Los Angeles, CA 90095 USA.
Hyun-Ik Jun3Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Jae Hoon Bahn3Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Ei-Wen Yang3Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Lijun Zhan4Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT 06030 USA.
Anneke Brümmer3Department of Integrative Biology and Physiology, University of California Los Angeles, Los Angeles, CA 90095 USA.
Xintao Wei4Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT 06030 USA.
Eric L Van Nostrand5Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093 USA.
Gabriel A Pratt5Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093 USA.
Gene W Yeo5Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA 92093 USA.
Brenton R Graveley4Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT 06030 USA.
Xinshu Xiao1Department of Bioengineering, University of California Los Angeles, Los Angeles, CA 90095 USA.ORCID 0000-0002-9362-8029
University of California, Los Angeles · USInstitute for Systems Biology · USUniversity of California San Diego · USQB3 · US

Funding

Comprhensive analysis of functional RNA elements encoded in the human genomeU54HG007005 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2012 to 2017
$12.5M
A Comprehensive Functional Map of Human Protein-RNA InteractionsU41HG009889 · NHGRI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI GRAVELEY, BRENTON R. · 2018 to 2021
$9.4M
Training Grant in Genomic Analysis and InterpretationT32HG002536 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Valerie A Arboleda, Harold Pimentel · 2002 to 2026
$8.6M
Analysis of functional genetic variants in RNA processing and expressionU01HG009417 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2017 to 2021
$3.2M
Prioritization of splicing-altering genetic variants in Alzheimer's diseaseR01AG056476 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2017 to 2021
$2.0M
Functional genetic variations in splicing regulationR01HG006264 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI XIAO, XINSHU GRACE · 2012 to 2016
$1.5M
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideR00HG009530 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI VAN NOSTRAND, ERIC LYMAN · 2020 to 2022
$747k
Robust, high-throughput identification of RNA processing regulators and regulatory networks genome-wideK99HG009530 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VAN NOSTRAND, ERIC LYMAN · 2017 to 2018
$250k
NHGRI NIH HHS K99 HG009530NHGRI NIH HHS R00 HG009530NHGRI NIH HHS R01 HG006264NHGRI NIH HHS T32 HG002536NHGRI NIH HHS U01 HG009417NHGRI NIH HHS U54 HG007005NIA NIH HHS R01 AG056476
6 · The paper itself

Abstract

Adenosine-to-inosine (A-to-I) editing, mediated by the ADAR enzymes, diversifies the transcriptome by altering RNA sequences. Recent studies reported global changes in RNA editing in disease and development. Such widespread editing variations necessitate an improved understanding of the regulatory mechanisms of RNA editing. Here, we study the roles of >200 RNA-binding proteins (RBPs) in mediating RNA editing in two human cell lines. Using RNA-sequencing and global protein-RNA binding data, we identify a number of RBPs as key regulators of A-to-I editing. These RBPs, such as TDP-43, DROSHA, NF45/90 and Ro60, mediate editing through various mechanisms including regulation of

Indexed as

Gene Expression Regulation, NeoplasticAdenosineAdenosine DeaminaseAlu ElementsAutoantigensGene Knockdown TechniquesHep G2 CellsHumansInosineK562 CellsLupus Erythematosus, SystemicRibonucleoproteinsRNA-Binding ProteinsRNA EditingRNA, Small CytoplasmicSequence Analysis, RNAADAR protein, humanAdenosineAdenosine DeaminaseAutoantigensInosineRibonucleoproteinsRNA-Binding ProteinsRNA, Small CytoplasmicRO60 protein, humanSS-A Antigen

Identifiers

PMID30652130
PMCPMC6331435
OpenAlexW2909784611

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.