Evidence map›Paper›PMID 30651420›Full record

ArticleMicrobes and environments2019

Genetic and Physiological Characteristics of a Novel Marine Propylene-Assimilating Halieaceae Bacterium Isolated from Seawater and the Diversity of Its Alkene and Epoxide Metabolism Genes.

Toshihiro Suzuki, Tomoki Yazawa, Naonori Morishita, Akihiko Maruyama, Hiroyuki Fuse

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

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  9. Macrofaunal control of microbial community structure in continental margin sediments.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Toshihiro SuzukiDepartment of Fermentation Sciences, Faculty of Applied Biosciences, Tokyo University of Agriculture.
Tomoki YazawaCollege of Systems Engineering and Science, Shibaura Institute of Technology.
Naonori MorishitaCollege of Systems Engineering and Science, Shibaura Institute of Technology.
Akihiko MaruyamaMicrobial and Genetic Resources Research Group, Bioproduction Research Institute of Advanced Industrial Science and Technology (AIST).
Hiroyuki FuseCollege of Systems Engineering and Science, Shibaura Institute of Technology.
Shibaura Institute of Technology · JPNational Institute of Advanced Industrial Science and Technology · JPTokyo University of Agriculture · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gram-negative marine propylene-assimilating bacterium, strain PE-TB08W, was isolated from surface seawater. A structural gene analysis using the 16S rRNA gene showed 96, 94, and 95% similarities to Halioglobus species, Haliea sp. ETY-M, and Haliea sp. ETY-NAG, respectively. A phylogenetic tree analysis showed that strain PE-TB08W belonged to the EG19 (Chromatocurvus)-Congregibacter-Haliea cluster within the Halieaceae (formerly Alteromonadaceae) family. Thus, strain PE-TB08W was characterized as a newly isolated Halieaceae bacterium; we suggest that this strain belongs to a new genus. Other bacterial characteristics were investigated and revealed that strain PE-TB08W assimilated propylene, n-butane, 1-butene, propanol, and 1-butanol (C3 and C4 gaseous hydrocarbons and primary alcohols), but not various other alcohols, including methane, ethane, ethylene, propane, and i-butane. The putative alkene monooxygenase (amo) gene in this strain was a soluble methane monooxygenase-type (sMMO) gene that is ubiquitous in alkene-assimilating bacteria for the initial oxidation of alkenes. In addition, two epoxide carboxylase systems containing epoxyalkane, the co-enzyme M transferase (EaCoMT) gene, and the co-enzyme M biosynthesis gene, were found in the upstream region of the sMMO gene cluster. Both of these genes were similar to those in Xanthobacter autotrophicus Py2 and were inductively expressed by propylene. These results have a significant impact on the genetic relationship between terrestrial and marine alkene-assimilating bacteria.

Indexed as

Genes, BacterialGenetic Variation1-ButanolAlkenesBacterial ProteinsBase CompositionCarbon-Sulfur LyasesDNA, BacterialEpoxy CompoundsGammaproteobacteriaGene Expression Regulation, BacterialMultigene FamilyOxidation-ReductionOxygenasesPhylogenyRNA, Ribosomal, 16S1-Butanol2-hydroxypropyl-CoM 2-mercaptoethanesulfonate lyase (epoxyalkane-ring forming)alkene monooxygenaseAlkenesBacterial ProteinsCarbon-Sulfur LyasesDNA, BacterialEpoxy CompoundsOxygenasespropyleneRNA, Ribosomal, 16Salkene monooxygenaseEaCoMTHalieaceae familymarine bacteriumpropylene assimilation

Identifiers

PMID30651420
PMCPMC6440738
OpenAlexW2911131535

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.