Evidence map›Paper›PMID 30651353›Full record

ArticleThe Journal of biological chemistry2019

The kinetic mechanisms of fast-decay red-fluorescent genetically encoded calcium indicators.

Silke Kerruth, Catherine Coates, Céline D Dürst, Thomas G Oertner, Katalin Török

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Subcellular Imaging of Neuronal Calcium Handling In Vivo.Journal of visualized experiments : JoVE · 2023
    Article
  10. Article
  11. Genetically encoded fluorescent biosensors for GPCR research.Frontiers in cell and developmental biology · 2022
    Review
  12. Article
  13. Review
  14. Article
  15. Design of Calcium-Binding Proteins to Sense Calcium.Molecules (Basel, Switzerland) · 2020
    Review
  16. Article
  17. Red Photoactivatable Genetic Optical-Indicators.Frontiers in cellular neuroscience · 2020
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Silke KerruthFrom the Molecular and Clinical Sciences Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom and.
Catherine CoatesFrom the Molecular and Clinical Sciences Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom and.
Céline D Dürstthe Institute for Synaptic Physiology, Center for Molecular Neurobiology Hamburg, 20251 Hamburg, Germany.
Thomas G Oertnerthe Institute for Synaptic Physiology, Center for Molecular Neurobiology Hamburg, 20251 Hamburg, Germany.
Katalin TörökFrom the Molecular and Clinical Sciences Research Institute, St. George's, University of London, London SW17 0RE, United Kingdom and k.torok@sgul.ac.uk.ORCID 0000-0002-3107-4534

Funding

Biotechnology and Biological Sciences Research Council BB/M02556X/1
6 · The paper itself

Abstract

Genetically encoded calcium indicators (GECIs) are useful reporters of cell-signaling, neuronal, and network activities. We have generated novel fast variants and investigated the kinetic mechanisms of two recently developed red-fluorescent GECIs (RGECIs), mApple-based jRGECO1a and mRuby-based jRCaMP1a. In the formation of fluorescent jRGECO1a and jRCaMP1a complexes, calcium binding is followed by rate-limiting isomerization. However, fluorescence decay of calcium-bound jRGECO1a follows a different pathway from its formation: dissociation of calcium occurs first, followed by the peptide, similarly to GCaMP-s. In contrast, fluorescence decay of calcium-bound jRCaMP1a occurs by the reversal of the on-pathway: peptide dissociation is followed by calcium. The mechanistic differences explain the generally slower off-kinetics of jRCaMP1a-type indicators compared with GCaMP-s and jRGECO1a-type GECI: the fluorescence decay rate of f-RCaMP1 was 21 s

Indexed as

Calcium SignalingAnthraquinonesCalciumHEK293 CellsHumansKineticsModels, MolecularAnthraquinonesCalciumnuclear fast redbiosensorcalciumcalcium imagingfluorescencekinetics

Identifiers

PMID30651353
PMCPMC6422079

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.