Evidence map›Paper›PMID 30651082›Full record

ArticleBMC infectious diseases2019

TLR9 polymorphism correlates with immune activation, CD4 decline and plasma IP10 levels in HIV patients.

Anjali Joshi, Erin B Punke, Tugba Mehmetoglu-Gurbuz, Diego P Peralta, Himanshu Garg

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
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  6. Review
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  8. TheCells · 2021
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  12. DNA Sensing in the Innate Immune Response.Physiology (Bethesda, Md.) · 2020
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Anjali JoshiDepartment of Biomedical Sciences, Center of Emphasis in Infectious Diseases, Texas Tech University Health Sciences Center, 5001 El Paso Dr, El Paso, TX, 79905, USA.
Erin B PunkeDepartment of Biomedical Sciences, Center of Emphasis in Infectious Diseases, Texas Tech University Health Sciences Center, 5001 El Paso Dr, El Paso, TX, 79905, USA.
Tugba Mehmetoglu-GurbuzDepartment of Biomedical Sciences, Center of Emphasis in Infectious Diseases, Texas Tech University Health Sciences Center, 5001 El Paso Dr, El Paso, TX, 79905, USA.
Diego P PeraltaDivision of Infectious Diseases, Department of Internal Medicine, Texas Tech University Health Sciences Center, El Paso, TX, 79905, USA.
Himanshu GargDepartment of Biomedical Sciences, Center of Emphasis in Infectious Diseases, Texas Tech University Health Sciences Center, 5001 El Paso Dr, El Paso, TX, 79905, USA. himanshu.garg@ttuhsc.edu.
Texas Tech University · USTexas Tech University Health Sciences Center · US

Funding

Host and Viral Factors in HIV Pathogenesis.R15AI116240 · NIAID · TEXAS TECH UNIVERSITY HEALTH SCIS CENTER · PI GARG, HIMANSHU · 2015 to 2015
$383k
National Institute of Allergy and Infectious Diseases AI116240-01A1NIAID NIH HHS R15 AI116240
6 · The paper itself

Abstract

backgroundThe mechanism behind HIV mediated immune activation remains debated, although the role of virus replication in this process is increasingly evident. Toll like Receptor 9 (TLR9) has been implicated in HIV mediated immune activation via sensing of viral CpG DNA. Polymorphisms in the TLR9 gene and promoter region including TLR9 1635A/G and 1486C/T have been found to be associated with multiple infectious diseases and cancers.

methodsIn the current study, we looked at the correlation of TLR9 polymorphisms 1635A/G and 1486C/T with key hallmarks of HIV disease in a cohort of 50 HIV infected patients. We analyzed CD4 counts, T cell immune activation characterized by upregulation of CD38 and HLA-DR and upregulation of plasma biomarkers of inflammation like LPS, sCD14, IL-6 and IP10 in the HIV patient cohort and compared it to healthy controls.

resultsWe found that TLR9 1635AA genotype was associated with lower CD4 counts and significantly higher immune activation in both CD4+ and CD8+ T cells. Analysis of HIV associated plasma biomarkers including LPS, sCD14, IL-6 and IP10 revealed a strong correlation between IP10 and immune activation. Interestingly, IP10 levels were also found to be higher in HIV patients with the 1635AA genotype. Furthermore, the TLR9 1486C/T polymorphism that is in linkage disequilibrium with 1635A/G was weakly associated with lower CD4 counts, higher CD8 immune activation and higher IP10 levels.

conclusionsAs TLR9 stimulation is known to induce IP10 production by dendritic cells, our findings provide new insights into HIV mediated immune activation and CD4 loss. TLR9 stimulation by viral CpG DNA may be important to HIV immunopathogenesis and the TLR9 polymorphisms 1635A/G and 1486C/T may be associated with disease progression.

Indexed as

Polymorphism, GeneticAdultCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCohort StudiesCross-Sectional StudiesDNA, ViralFemaleHIV InfectionsHLA-DR AntigensHumansInterleukin-6Lymphocyte ActivationMaleReceptors, CytokineToll-Like Receptor 9DNA, ViralHLA-DR AntigensIL6 protein, humanInterleukin-6IP10-Mig receptorReceptors, CytokineTLR9 protein, humanToll-Like Receptor 9AIDSHIVImmune activationIP10Plasma biomarkersTLR9 1486C/TTLR9 1635A/GTLR9 polymorphisms

Identifiers

PMID30651082
PMCPMC6335820
OpenAlexW2947901838

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.