Evidence map›Paper›PMID 30650351›Full record

ArticleCell reports2019

Binding of FANCI-FANCD2 Complex to RNA and R-Loops Stimulates Robust FANCD2 Monoubiquitination.

Zhuobin Liang, Fengshan Liang, Yaqun Teng, Xiaoyong Chen, Jingchun Liu, Simonne Longerich, Timsi Rao, Allison M Green, Natalie B Collins, Yong Xiong and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 126 citations in OpenAlex.

  1. Review
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  13. Review
  14. Peroxiredoxin 1 safeguards the nucleolar genome from oxidative damage.bioRxiv : the preprint server for biology · 2025
    Article
  15. Article
  16. R-loops: a key driver of inflammatory responses in cancer.Experimental & molecular medicine · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Zhuobin LiangDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA; Department of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA.
Fengshan LiangDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA; Department of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA.
Yaqun TengSchool of Medicine, Tsinghua University, No.1 Tsinghua Yuan, Haidian District, Beijing 100084, China; Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15219, USA.
Xiaoyong ChenDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA.
Jingchun LiuDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA.
Simonne LongerichDepartment of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA.
Timsi RaoDepartment of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA.
Allison M GreenDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA; Department of Pathology, Yale Medical School, New Haven, CT 06520, USA.
Natalie B CollinsDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA.
Yong XiongDepartment of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA.
Li LanDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, PA 15219, USA; Massachusetts General Hospital Cancer Center, Harvard Medical School, Boston, MA 02129, USA; Department of Radiation Oncology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02129, USA.
Patrick SungDepartment of Molecular Biology and Biophysics, Yale Medical School, New Haven, CT 06520, USA; Department of Biochemistry and Structural Biology, University of Texas Health Science Center at San Antonio, San Antonio, TX 78229, USA. Electronic address: sungp@uthscsa.edu.
Gary M KupferDepartment of Pediatrics, Yale Medical School, New Haven, CT 06520, USA; Department of Pathology, Yale Medical School, New Haven, CT 06520, USA. Electronic address: gary.kupfer@yale.edu.
Yale University · USDana-Farber Cancer Institute · USHarvard University · USUniversity of Pittsburgh · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Yale Cooperative Hematology Specialized Core CenterU54DK106857 · NIDDK · YALE UNIVERSITY · PI JOHN HWA, Diane S Krause · 2015 to 2026
$9.7M
Mechanistic Dissection of the Fanconi Anemia Pathway of DNA Damage Response and RR01CA168635 · NCI · YALE UNIVERSITY · PI Gary M Kupfer, Patrick Sung · 2013 to 2026
$5.8M
Transcription-Coupled Homologous Recombination upon DNA DamageR01GM118833 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI LAN, LI · 2016 to 2020
$1.6M
Genome Maintenance via the BRCA-PALB2 Tumor Suppressor NetworkR01CA220123 · NCI · YALE UNIVERSITY · PI SUNG, PATRICK · 2017 to 2019
$1.2M
NCI NIH HHS P30 CA054174NCI NIH HHS R01 CA168635NCI NIH HHS R01 CA220123NIDDK NIH HHS U54 DK106857NIGMS NIH HHS R01 GM118833
6 · The paper itself

Abstract

Fanconi anemia (FA) is characterized by developmental abnormalities, bone marrow failure, and cancer predisposition. FA cells are hypersensitive to DNA replicative stress and accumulate co-transcriptional R-loops. Here, we use the Damage At RNA Transcription assay to reveal colocalization of FANCD2 with R-loops in a highly transcribed genomic locus upon DNA damage. We further demonstrate that highly purified human FANCI-FANCD2 (ID2) complex binds synthetic single-stranded RNA (ssRNA) and R-loop substrates with high affinity, preferring guanine-rich sequences. Importantly, we elucidate that human ID2 binds an R-loop structure via recognition of the displaced ssDNA and ssRNA but not the RNA:DNA hybrids. Finally, a series of RNA and R-loop substrates are found to strongly stimulate ID2 monoubiquitination, with activity corresponding to their binding affinity. In summary, our results support a mechanism whereby the ID2 complex suppresses the formation of pathogenic R-loops by binding ssRNA and ssDNA species, thereby activating the FA pathway.

Indexed as

AnimalsChickensDNADNA DamageFanconi AnemiaFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group ProteinsHumansInhibitor of Differentiation Protein 2MaleR-Loop StructuresRNAUbiquitinationDNAFANCD2 protein, humanFANCI protein, humanFanconi Anemia Complementation Group D2 ProteinFanconi Anemia Complementation Group ProteinsID2 protein, humanIdb2 protein, mouseInhibitor of Differentiation Protein 2RNADNA damageFANCD2FANCI-FANCD2Fanconi anemiamonoubiquitinationR-loopRNAtranscription perturbation

Identifiers

PMID30650351
PMCPMC6350941
OpenAlexW2909481675

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.