Evidence map›Paper›PMID 30650190›Full record

SynthesisInternational journal of cancer2019

Genetic variants in RUNX3, AMD1 and MSRA in the methionine metabolic pathway and survival in nonsmall cell lung cancer patients.

Ka Chen, Hongliang Liu, Zhensheng Liu, Sheng Luo, Edward F Patz, Patricia G Moorman, Li Su, Sipeng Shen, David C Christiani, Qingyi Wei

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in International journal of cancer, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 33 citations in OpenAlex.

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  18. Influence ofCancer management and research · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Ka ChenResearch Center for Nutrition and Food Safety, Institute of Military Preventive Medicine, Third Military Medical University, Chongqing, People's Republic of China.
Hongliang LiuDuke Cancer Institute, Duke University Medical Center, Durham, NC.ORCID 0000-0001-7639-0904
Zhensheng LiuDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Sheng LuoDepartment of Biostatistics and Bioinformatics, Duke University School of Medicine, Durham, NC.
Edward F PatzDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Patricia G MoormanDuke Cancer Institute, Duke University Medical Center, Durham, NC.
Li SuDepartment of Community and Family Medicine, Duke University Medical Center, Durham, NC.
Sipeng ShenDepartments of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA.ORCID 0000-0003-0436-4736
David C ChristianiDepartments of Environmental Health and Department of Epidemiology, Harvard School of Public Health, Boston, MA.
Qingyi WeiDuke Cancer Institute, Duke University Medical Center, Durham, NC.ORCID 0000-0002-3845-9445
Duke University · USMassachusetts Department of Public Health · USArmy Medical University · CN

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Translational studies of Hsp90 inhibitors in NSCLCP50CA090578 · NCI · DANA-FARBER CANCER INST · PI YEAP, BEOW Y · 2008 to 2012
$11.4M
Statistical Methods for Analysis of Massive Genetic and Genomic Data in Cancer ResearchR35CA197449 · NCI · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI XIHONG LIN · 2015 to 2026
$10.9M
Molecular and Genetic Analysis of Lung Cancer SurvivalR01CA092824 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 2002 to 2013
$5.9M
SPORE in Lung CancerP20CA090578 · NCI · DANA-FARBER CANCER INSTITUTE · PI JOHNSON, BRUCE E. · 2003 to 2007
$5.1M
GENETIC SUSCEPTIBILITY TO LUNG CANCERR01CA074386 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI CHRISTIANI, DAVID C · 1997 to 2008
$4.8M
Statistical Methods for Clinical Trials with Multivariate Longitudinal OutcomesR01NS091307 · NINDS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI LUO, SHENG · 2015 to 2018
$1.2M
NCI NIH HHS P20 CA090578NCI NIH HHS P30 CA014236NCI NIH HHS P50 CA090578NCI NIH HHS R01 CA074386NCI NIH HHS R01 CA092824NCI NIH HHS R35 CA197449NINDS NIH HHS R01 NS091307
6 · The paper itself

Abstract

Abnormal methionine dependence in cancer cells has led to methionine restriction as a potential therapeutic strategy. We hypothesized that genetic variants involved in methionine-metabolic genes are associated with survival in nonsmall cell lung cancer (NSCLC) patients. Therefore, we investigated associations of 16,378 common single-nucleotide polymorphisms (SNPs) in 97 methionine-metabolic pathway genes with overall survival (OS) in NSCLC patients using genotyping data from two published genome-wide association study (GWAS) datasets. In the single-locus analysis, 1,005 SNPs were significantly associated with NSCLC OS (p < 0.05 and false-positive report probability < 0.2) in the discovery dataset. Three SNPs (RUNX3 rs7553295 G > T, AMD1 rs1279590 G > A and MSRA rs73534533 C > A) were replicated in the validation dataset, and their meta-analysis showed an adjusted hazards ratio [HR] of 0.82 [95% confidence interval (CI) =0.75-0.89] and p

Indexed as

Adenosylmethionine DecarboxylaseAgedCarcinoma, Non-Small-Cell LungCore Binding Factor Alpha 3 SubunitFemaleGenome-Wide Association StudyHumansLung NeoplasmsMaleMethionineMethionine Sulfoxide ReductasesMiddle AgedMutationPolymorphism, Single NucleotideProportional Hazards ModelsQuantitative Trait LociAdenosylmethionine DecarboxylaseAMD1 protein, humanCore Binding Factor Alpha 3 SubunitMethioninemethionine sulfoxide reductaseMethionine Sulfoxide ReductasesRNA, MessengerRunx3 protein, humangenome-wide association studymethioninenonsmall cell lung cancersingle-nucleotide polymorphismsurvival

Identifiers

PMID30650190
PMCPMC6828159
OpenAlexW2909042882

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.