Evidence map›Paper›PMID 30649866›Full record

ArticleAnalytical chemistry2019

Characterization and Quantification of Highly Sulfated Glycosaminoglycan Isomers by Gated-Trapped Ion Mobility Spectrometry Negative Electron Transfer Dissociation MS/MS.

Juan Wei, Jiandong Wu, Yang Tang, Mark E Ridgeway, Melvin A Park, Catherine E Costello, Joseph Zaia, Cheng Lin

Abstract read
In one paragraph

Article in Analytical chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Isolation and Compositional Analysis of Glycosaminoglycans.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Effective discrimination of gas-phase peptide conformers using TIMS-ECD-ToF MS/MS.Analytical methods : advancing methods and applications · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Analysis of the Glycosaminoglycan Chains of Proteoglycans.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2021
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Juan WeiCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.
Jiandong WuCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.
Yang TangCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.
Mark E RidgewayBruker Daltonics , Billerica , Massachusetts 01821 , United States.
Melvin A ParkBruker Daltonics , Billerica , Massachusetts 01821 , United States.
Catherine E CostelloCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.ORCID 0000-0003-1594-5122
Joseph ZaiaCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.ORCID 0000-0001-9497-8701
Cheng LinCenter for Biomedical Mass Spectrometry , Boston University School of Medicine , Boston , Massachusetts 02118 , United States.ORCID 0000-0003-3653-9633
Boston University · USBruker (United States) · US

Funding

Mass Spectrometry Resource for Biology and MedicineP41GM104603 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2012 to 2017
$10.4M
Legacy Support During Closure of the Mass Spectrometry Resource for Biology and MedicineR24GM134210 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2019 to 2021
$2.1M
LTQ-FT MS System for On-line Protein and Glycan AnalysisS10RR025082 · NCRR · BOSTON UNIVERSITY MEDICAL CAMPUS · PI COSTELLO, CATHERINE E. · 2009 to 2009
$1.3M
An open-source software suite for processing glycomics and glycoproteomics mass spectral dataU01CA221234 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ZAIA, JOSEPH · 2017 to 2019
$1.2M
Software for automated interpretation of heparan sulfate tandem mass spectraR21HL131554 · NHLBI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ZAIA, JOSEPH · 2015 to 2016
$761k
Characterization of glycan isomers by trapped ion mobility spectrometry-electron activated dissociation tandem mass spectrometryR21GM122635 · NIGMS · BOSTON UNIVERSITY MEDICAL CAMPUS · PI LIN, CHENG · 2016 to 2017
$629k
Novel Point-of-Care Tool to Predict Response to Sorafenib in Hepatocellular CarcinomaR21CA190945 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KASEB, AHMED · 2016 to 2017
$383k
NCI NIH HHS R21 CA190945NCI NIH HHS U01 CA221234NCRR NIH HHS S10 RR025082NHLBI NIH HHS R21 HL131554NIGMS NIH HHS P41 GM104603NIGMS NIH HHS R21 GM122635NIGMS NIH HHS R24 GM134210
6 · The paper itself

Abstract

Glycosaminoglycans (GAGs) play vital roles in many biological processes and are naturally present as complex mixtures of polysaccharides with tremendous structural heterogeneity, including many structural isomers. Mass spectrometric analysis of GAG isomers, in particular highly sulfated heparin (Hep) and heparan sulfate (HS), is challenging because of their structural similarity and facile sulfo losses during analysis. Herein, we show that highly sulfated Hep/HS isomers may be resolved by gated-trapped ion mobility spectrometry (gated-TIMS) with negligible sulfo losses. Subsequent negative electron transfer dissociation (NETD) tandem mass spectrometry (MS/MS) analysis of TIMS-separated Hep/HS isomers generated extensive glycosidic and cross-ring fragments for confident isomer differentiation and structure elucidation. The high mobility resolution and preservation of labile sulfo modifications afforded by gated-TIMS MS analysis also allowed relative quantification of highly sulfated heparin isomers. These results show that the gated-TIMS-NETD MS/MS approach is useful for both qualitative and quantitative analysis of highly sulfated Hep/HS compounds in a manner not possible with other techniques.

Indexed as

Carbohydrate ConformationElectron TransportGlycosaminoglycansIon Mobility SpectrometryStereoisomerismSulfatesTandem Mass SpectrometryGlycosaminoglycansSulfates

Identifiers

PMID30649866
PMCPMC6441329
OpenAlexW2911160394

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.