Evidence map›Paper›PMID 30649481›Full record

ReviewMedical mycology2019

Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases.

Amir Arastehfar, Wenjie Fang, Abdullah M S Al-Hatmi, Mohammad Hosein Afsarian, Farnaz Daneshnia, Mina Bakhtiari, Sara Khanjari Sadati, Hamid Badali, Sadegh Khodavaisy, Ferry Hagen and 4 more

Erratum issuedOpen access · hybridAbstract readReview
In one paragraph

Review in Medical mycology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. An update on clinically relevant, rare, and emergingClinical microbiology reviews · 2025
    Review
  2. International journal of systematic and evolutionary microbiology · 2025
    Article
  3. Central line-associatedQatar medical journal · 2025
    Article
  4. Article
  5. Article
  6. Foods (Basel, Switzerland) · 2024
    Article
  7. Article
  8. Article
  9. A pseudo-outbreak ofFrontiers in cellular and infection microbiology · 2023
    Article
  10. Article
  11. Characterization ofCurrent medical mycology · 2021
    Article
  12. Article
  13. Article
  14. Spectrum and management of rareTherapeutic advances in infectious disease
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 4 countries.

Amir ArastehfarWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Wenjie FangDepartment of Dermatology, Shanghai Changzheng Hospital, Second Military Medical University, Shanghai, China.
Abdullah M S Al-HatmiWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Mohammad Hosein AfsarianDepartments of Parasitology & Mycology, Fasa University of Medical Sciences, Fasa, Iran.
Farnaz DaneshniaWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Mina BakhtiariBasic Sciences in Infectious Diseases Research Center, and Department of Medical Mycology and Parasitology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Sara Khanjari SadatiBasic Sciences in Infectious Diseases Research Center, and Department of Medical Mycology and Parasitology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Hamid BadaliDepartment of Medical Mycology/Invasive Fungi Research Center (IFRC), School of Medicine, Mazandaran University of Medical Sciences, Sari, Iran.
Sadegh KhodavaisyDepartment of Medical Parasitology and Mycology, School of Public Health, Tehran University of Medical Sciences, Tehran, Iran.
Ferry HagenWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Wanqing LiaoDepartment of Dermatology, Shanghai Changzheng Hospital, Second Military Medical University, Shanghai, China.
Weihua PanDepartment of Dermatology, Shanghai Changzheng Hospital, Second Military Medical University, Shanghai, China.
Kamiar ZomorodianBasic Sciences in Infectious Diseases Research Center, and Department of Medical Mycology and Parasitology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Teun BoekhoutWesterdijk Fungal Biodiversity Institute, Utrecht, the Netherlands.
Westerdijk Fungal Biodiversity Institute · NLShiraz University of Medical Sciences · IRSecond Military Medical University · CNFasa University of Medical Sciences · IRMazandaran University of Medical Sciences · IRMinistry of Health · OMShanghai Changzheng Hospital · CNTehran University of Medical Sciences · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although Cyberlindnera fabinaii is a rare opportunist yeast species, its ability to cause septicemia, produce biofilm, and rapid acquisition of resistance to fluconazole and voriconazole, reinforced the urge for its identification from its closely related species. Widely used biochemical assays mainly identify Cyberlindnera fabinaii as Cyberlindnera jadinii and Wickerhamomyces anomalus, resulting in underestimation of this yeast in clinical settings. Moreover, the urge for a reliable molecular means of identification remains unsolved for 28 years. In order to unequivocally differentiate Cy. fabianii, Cy. mississipiensis, Cy. jadinii, and W. anomalus, we designed a dual-function multiplex polymerase chain reaction (PCR) assay. Challenging our dual-function multiplex PCR assay with 30 most clinically important yeast species, proved its specificity. Although conventional PCR could differentiate four target species, the real-time PCR counterpart due to Tm overlap misidentified Cy. mississipiensis as Cy. jadinii. Alongside of presenting a comprehensive literature review of published cases of Cy. fabianii from 1990 to 2018, we collected various clinical isolates from Tehran, Shiraz, and Fasa (July 1, 2017, to December 31, 2017) to find a passive relative distribution of these closely-related species in Iran. Subjecting our Iranian collection of yeast isolates to matrix-assisted laser desorption/ionization-time of flight (MALDI-TOF) MS and LSU and ITS rDNA sequencing revealed six isolates of Cy. fabianii (central venous catheter n = 2 and vaginal swabs n = 4) and one isolate of Cy. jadinii (vaginal swabs). Due to the use of biochemical assays in global ARTEMIS study, we encourage reidentification of clinical isolates of Cy. jadinii and Cy. jadinii using MALDI-TOF or Sanger sequencing that might lead to correcting the distribution of this fungus.

Indexed as

Antifungal AgentsDNA PrimersDNA, RibosomalFemaleHumansIranMaleMultiplex Polymerase Chain ReactionMycosesSaccharomycetalesSensitivity and SpecificitySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationVaginaAntifungal AgentsDNA PrimersDNA, Ribosomalbiochemical assaysCy. fabianiiCy. jadiniiCy. mississipiensismultiplex PCRW. anomalus

Identifiers

PMID30649481
PMCPMC6739237
OpenAlexW4255020383

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.