Evidence map›Paper›PMID 30649440›Full record

ArticleJournal of the National Cancer Institute2019

Pattern Recognition Receptor Polymorphisms as Predictors of Oxaliplatin Benefit in Colorectal Cancer.

Victoria Gray, Sarah Briggs, Claire Palles, Emma Jaeger, Timothy Iveson, Rachel Kerr, Mark P Saunders, James Paul, Andrea Harkin, John McQueen and 14 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of the National Cancer Institute, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Contribution of TLR4 to colorectal tumor microenvironment, etiology and prognosis.Journal of cancer research and clinical oncology · 2023
    Pooled it
  2. Review
  3. Identification of a Novel Risk Model: A Five-Gene Prognostic Signature for Pancreatic Cancer.Evidence-based complementary and alternative medicine : eCAM · 2022
    Article
  4. Article
  5. Article
  6. TRIM29 Reverses Oxaliplatin Resistance of P53 Mutant Colon Cancer Cell.Canadian journal of gastroenterology & hepatology · 2021
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Victoria GraySee the Notes section for the full list of authors' affiliations.
Sarah BriggsSee the Notes section for the full list of authors' affiliations.
Claire PallesSee the Notes section for the full list of authors' affiliations.
Emma JaegerSee the Notes section for the full list of authors' affiliations.
Timothy IvesonSee the Notes section for the full list of authors' affiliations.
Rachel KerrSee the Notes section for the full list of authors' affiliations.
Mark P SaundersSee the Notes section for the full list of authors' affiliations.
James PaulSee the Notes section for the full list of authors' affiliations.
Andrea HarkinSee the Notes section for the full list of authors' affiliations.
John McQueenSee the Notes section for the full list of authors' affiliations.
Matthew G SummersSee the Notes section for the full list of authors' affiliations.
Elaine JohnstoneSee the Notes section for the full list of authors' affiliations.
Haitao WangSee the Notes section for the full list of authors' affiliations.
Laura GatcombeSee the Notes section for the full list of authors' affiliations.
Timothy S MaughanSee the Notes section for the full list of authors' affiliations.
Richard KaplanSee the Notes section for the full list of authors' affiliations.
Valentina Escott-PriceSee the Notes section for the full list of authors' affiliations.
Nada A Al-TassanSee the Notes section for the full list of authors' affiliations.
Brian F MeyerSee the Notes section for the full list of authors' affiliations.
Salma M WakilSee the Notes section for the full list of authors' affiliations.
Richard S HoulstonSee the Notes section for the full list of authors' affiliations.
Jeremy P CheadleSee the Notes section for the full list of authors' affiliations.
Ian TomlinsonSee the Notes section for the full list of authors' affiliations.
David N ChurchSee the Notes section for the full list of authors' affiliations.

Funding

Cancer Research UK 13941Cancer Research UK 16459Cancer Research UK 25355Cancer Research UK C6716/A9894Department of Health HTA/14/140/84Medical Research Council G0601705Medical Research Council MC_UU_12023/20Medical Research Council MC_UU_12023/25Medical Research Council MR/L010305/1Medical Research Council MR/L023784/2Medical Research Council MR/M016587/1Medical Research Council MR/P001106/1Wellcome TrustWellcome Trust 090532/Z/09/ZWellcome Trust 203141/Z/16/Z
6 · The paper itself

Abstract

backgroundConstitutional loss of function (LOF) single nucleotide polymorphisms (SNPs) in pattern recognition receptors FPR1, TLR3, and TLR4 have previously been reported to predict oxaliplatin benefit in colorectal cancer. Confirmation of this association could substantially improve patient stratification.

methodsWe performed a retrospective biomarker analysis of the Short Course in Oncology Therapy (SCOT) and COIN/COIN-B trials. Participant status for LOF variants in FPR1 (rs867228), TLR3 (rs3775291), and TLR4 (rs4986790/rs4986791) was determined by genotyping array or genotype imputation. Associations between LOF variants and disease-free survival (DFS) and overall survival (OS) were analyzed by Cox regression, adjusted for confounders, using additive, dominant, and recessive genetic models. All statistical tests were two-sided.

resultsOur validation study populations included 2929 and 1948 patients in the SCOT and COIN/COIN-B cohorts, respectively, of whom 2728 and 1672 patients had functional status of all three SNPs determined. We found no evidence of an association between any SNP and DFS in the SCOT cohort, or with OS in either cohort, irrespective of the type of model used. This included models for which an association was previously reported for rs867228 (recessive model, multivariable-adjusted hazard ratio [HR] for DFS in SCOT = 1.19, 95% confidence interval [CI] = 0.99 to 1.45, P = .07; HR for OS in COIN/COIN-B = 0.92, 95% CI = 0.63 to 1.34, P = .66), and rs4986790 (dominant model, multivariable-adjusted HR for DFS in SCOT = 0.86, 95% CI = 0.65 to 1.13, P = .27; HR for OS in COIN/COIN-B = 1.08, 95% CI = 0.90 to 1.31, P = .40).

conclusionIn this prespecified analysis of two large clinical trials, we found no evidence that constitutional LOF SNPs in FPR1, TLR3, or TLR4 are associated with differential benefit from oxaliplatin. Our results suggest these SNPs are unlikely to be clinically useful biomarkers.

Indexed as

AdultAgedAged, 80 and overAntineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorColorectal NeoplasmsDisease-Free SurvivalFemaleGenotypeHumansMaleMiddle AgedOxaliplatinPolymorphism, GeneticPolymorphism, Single NucleotideReceptors, Formyl PeptideBiomarkers, TumorFPR1 protein, humanOxaliplatinReceptors, Formyl PeptideReceptors, Pattern RecognitionTLR3 protein, humanTLR4 protein, humanToll-Like Receptor 3Toll-Like Receptor 4

Identifiers

PMID30649440
PMCPMC6695319
OpenAlexW2896022059

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.