Evidence map›Paper›PMID 30649295›Full record

ArticleDatabase : the journal of biological databases and curation2019

Involving community in genes and pathway curation.

Sushma Naithani, Parul Gupta, Justin Preece, Priyanka Garg, Valerie Fraser, Lillian K Padgitt-Cobb, Matthew Martin, Kelly Vining, Pankaj Jaiswal

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sushma NaithaniDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Parul GuptaDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Justin PreeceDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Priyanka GargDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Valerie FraserDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Lillian K Padgitt-CobbDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, OR, USA.
Matthew MartinDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.
Kelly ViningDepartment of Horticulture, Oregon State University, Corvallis, OR, USA.
Pankaj JaiswalDepartment of Botany and Plant Pathology, Oregon State University, Corvallis, OR, USA.

Funding

Reactome: An Open Knowledgebase of Human PathwaysP41HG003751 · NHGRI · ONTARIO INSTITUTE FOR CANCER RESEARCH · PI STEIN, LINCOLN D. · 2007 to 2011
$4.5M
NHGRI NIH HHS P41 HG003751
6 · The paper itself

Abstract

Biocuration plays a crucial role in building databases and complex systems-level platforms required for processing, annotating and analyzing 'Big Data' in biology. However, biocuration efforts cannot keep pace with a dramatic increase in the production of omics data; this presents one of the bottlenecks in genomics. In two pathway curation jamborees, Plant Reactome curators tested strategies for introducing researchers to pathway curation tools, harnessing biologists' expertise in curating plant pathways and developing a network of community biocurators. We summarize the strategy, workflow and outcomes of these exercises, and discuss the role of community biocuration in advancing databases and genomic resources.

Indexed as

Databases, GeneticBig DataData CurationData MiningGene Regulatory NetworksGenes, PlantGenomicsWorkflow

Identifiers

PMID30649295
PMCPMC6334007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.