Evidence map›Paper›PMID 30648789›Full record

ArticleMolecular oncology2019

Expression of long non-coding RNA ENSG00000226738 (LncKLHDC7B) is enriched in the immunomodulatory triple-negative breast cancer subtype and its alteration promotes cell migration, invasion, and resistance to cell death.

Fredy Omar Beltrán-Anaya, Sandra Romero-Córdoba, Rosa Rebollar-Vega, Oscar Arrieta, Verónica Bautista-Piña, Carlos Dominguez-Reyes, Felipe Villegas-Carlos, Alberto Tenorio-Torres, Luis Alfaro-Riuz, Silvia Jiménez-Morales and 6 more

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
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  7. Metformin and long non-coding RNAs in breast cancer.Journal of translational medicine · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Fredy Omar Beltrán-AnayaLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Sandra Romero-CórdobaLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Rosa Rebollar-VegaLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Oscar ArrietaThoracic Oncology Unit, Instituto Nacional de Cancerología (INCan), Mexico City, Mexico.
Verónica Bautista-PiñaInstituto de Enfermedades de la Mama FUCAM, Mexico City, Mexico.
Carlos Dominguez-ReyesInstituto de Enfermedades de la Mama FUCAM, Mexico City, Mexico.
Felipe Villegas-CarlosInstituto de Enfermedades de la Mama FUCAM, Mexico City, Mexico.
Alberto Tenorio-TorresInstituto de Enfermedades de la Mama FUCAM, Mexico City, Mexico.
Luis Alfaro-RiuzLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Silvia Jiménez-MoralesLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Alberto Cedro-TandaLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Magdalena Ríos-RomeroLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Juan Pablo Reyes-GrajedaUnidad de Proteómica Médica, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Elda TagliabueDepartment of Experimental Oncology and Molecular Medicine, Istituto Nazionale dei Tumori, Milan, Italy.
Marilena V IorioDepartment of Experimental Oncology and Molecular Medicine, Istituto Nazionale dei Tumori, Milan, Italy.
Alfredo Hidalgo-MirandaLaboratorio de Genómica del Cáncer, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
National Institute of Genomic Medicine · MXInstituto Nacional de Enfermedades Respiratorias · MXFondazione IRCCS Istituto Nazionale dei Tumori · ITInstituto Nacional de Cancerología · MXUniversidad Nacional Autónoma de México · MX

Funding

Frontiers in Science grant 1285Mexican National Council of Science and Technology Basic Science 258936
6 · The paper itself

Abstract

Triple negative breast cancer (TNBC) represents an aggressive phenotype with poor prognosis compared with ER, PR, and HER2-positive tumors. TNBC is a heterogeneous disease, and gene expression analysis has identified seven molecular subtypes. Accumulating evidence demonstrates that long non-coding RNA (lncRNA) are involved in regulation of gene expression and cancer biology, contributing to essential cancer cell functions. In this study, we analyzed the expression profile of lncRNA in TNBC subtypes from 156 TNBC samples, and then characterized the functional role of LncKLHDC7B (ENSG00000226738). A total of 710 lncRNA were found to be differentially expressed between TNBC subtypes, and a subset of these altered lncRNA were independently validated. We discovered that LncKLHDC7B (ENSG00000226738) acts as a transcriptional modulator of its neighboring coding gene KLHDC7B in the immunomodulatory subtype. Furthermore, LncKLHDC7B knockdown enhanced migration and invasion, and promoted resistance to cellular death. Our findings confirmed the contribution of LncKLHDC7B to induction of apoptosis and inhibition of cell migration and invasion, suggesting that TNBC tumors with enrichment of LncKLHDC7B may exhibit distinct regulatory activity, or that this may be a generalized process in breast cancer. Additionally, in silico analysis confirmed for the first time that the low expression of KLHDC7B and LncKLHDC7B is associated with poor prognosis in patients with breast cancer.

Indexed as

Gene Expression Regulation, NeoplasticImmunomodulationApoptosisCell Line, TumorCell MovementDown-RegulationGene SilencingHumansKaplan-Meier EstimateMiddle AgedNeoplasm InvasivenessPhenotypeRNA, Long NoncodingTriple Negative Breast NeoplasmsUp-RegulationRNA, Long NoncodingENSG00000226738invasionLncKLHDC7Blong non-coding RNAmigrationtriple-negative breast cancer

Identifiers

PMID30648789
PMCPMC6441920
OpenAlexW2910817347

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.