Evidence map›Paper›PMID 30645582›Full record

ArticlePloS one2019

CRISPR-Cas9 interrogation of a putative fetal globin repressor in human erythroid cells.

Jennifer E Chung, Wendy Magis, Jonathan Vu, Seok-Jin Heo, Kirmo Wartiovaara, Mark C Walters, Ryo Kurita, Yukio Nakamura, Dario Boffelli, David I K Martin and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  8. Article
  9. Editing outside the body: Ex vivo gene-modification for β-hemoglobinopathy cellular therapy.Molecular therapy : the journal of the American Society of Gene Therapy · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Jennifer E ChungInnovative Genomics Institute, University of California, Berkeley, CA, United States of America.ORCID 0000-0003-1332-6301
Wendy MagisChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
Jonathan VuInnovative Genomics Institute, University of California, Berkeley, CA, United States of America.ORCID 0000-0002-4950-7967
Seok-Jin HeoChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
Kirmo WartiovaaraChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
Mark C WaltersChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
Ryo KuritaCell Engineering Division, RIKEN BioResource Center, Tsukuba, Ibaraki, Japan.
Yukio NakamuraCell Engineering Division, RIKEN BioResource Center, Tsukuba, Ibaraki, Japan.
Dario BoffelliChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
David I K MartinChildren's Hospital Oakland Research Institute, UCSF Benioff Children's Hospital, Oakland, CA, United States of America.
Jacob E CornInnovative Genomics Institute, University of California, Berkeley, CA, United States of America.
Mark A DeWittInnovative Genomics Institute, University of California, Berkeley, CA, United States of America.ORCID 0000-0001-8784-0026
UCSF Benioff Children's Hospital · USInnovative Genomics Institute · USRIKEN BioResource Research Center · JPUniversity of Helsinki · FIUniversity of Tsukuba · JP

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIH HHS S10 OD018174
6 · The paper itself

Abstract

Sickle Cell Disease and ß-thalassemia, which are caused by defective or deficient adult ß-globin (HBB) respectively, are the most common serious genetic blood diseases in the world. Persistent expression of the fetal ß-like globin, also known as 𝛾-globin, can ameliorate both disorders by serving in place of the adult ß-globin as a part of the fetal hemoglobin tetramer (HbF). Here we use CRISPR-Cas9 gene editing to explore a potential 𝛾-globin silencer region upstream of the δ-globin gene identified by comparison of naturally-occurring deletion mutations associated with up-regulated 𝛾-globin. We find that deletion of a 1.7 kb consensus element or select 350 bp sub-regions from bulk populations of cells increases levels of HbF. Screening of individual sgRNAs in one sub-region revealed three single guides that caused increases in 𝛾-globin expression. Deletion of the 1.7 kb region in HUDEP-2 clonal sublines, and in colonies derived from CD34+ hematopoietic stem/progenitor cells (HSPCs), does not cause significant up-regulation of 𝛾-globin. These data suggest that the 1.7 kb region is not an autonomous 𝛾-globin silencer, and thus by itself is not a suitable therapeutic target for gene editing treatment of ß-hemoglobinopathies.

Indexed as

Cell LineCRISPR-Associated Protein 9CRISPR-Cas SystemsDNA, IntergenicErythroid CellsFetal Hemoglobingamma-GlobinsGene EditingGene SilencingGenotypeHematopoietic Stem CellsHumansPhenotypeRepressor ProteinsSequence DeletionUp-RegulationCRISPR-Associated Protein 9DNA, IntergenicFetal Hemoglobingamma-GlobinsRepressor Proteins

Identifiers

PMID30645582
PMCPMC6333401
OpenAlexW2951818190

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.