Evidence map›Paper›PMID 30645118›Full record

ArticleJournal of chemical theory and computation2019

Development of Polarizable Gaussian Model for Molecular Mechanical Calculations I: Atomic Polarizability Parameterization To Reproduce ab Initio Anisotropy.

Junmei Wang, Piotr Cieplak, Ray Luo, Yong Duan

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Isotropic Periodic Sum for Polarizable Gaussian Multipole Model.Journal of chemical theory and computation · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. AmberTools.Journal of chemical information and modeling · 2023
    Article
  8. Streamlining and Optimizing Strategies of Electrostatic Parameterization.Journal of chemical theory and computation · 2023
    Article
  9. Optimal Scheme to Achieve Energy Conservation in Induced Dipole Models.Journal of chemical theory and computation · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Journal of chemical theory and computation · 2022
    Article
  14. Article
  15. Atomic Polarizabilities for Interactive Dipole Induction Models.Journal of chemical information and modeling · 2022
    Article
  16. Article
  17. Recent Force Field Strategies for Intrinsically Disordered Proteins.Journal of chemical information and modeling · 2021
    Review
  18. Development of a Pantetheine Force Field Library for Molecular Modeling.Journal of chemical information and modeling · 2021
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Junmei WangDepartment of Pharmaceutical Sciences , University of Pittsburgh , 3501 Terrace Street , Pittsburgh , Pennsylvania 15261 , United States.ORCID http://orcid.org/0000-0002-9607-8229
Piotr CieplakSBP Medical Discovery Institute , 10901 North Torrey Pines Road , La Jolla , California 92037 , United States.
Ray LuoDepartments of Molecular Biology and Biochemistry, Chemical and Biomolecular Engineering, Materials Science and Engineering, and Biomedical Engineering , University of California, Irvine , Irvine , California 92697 , United States.ORCID http://orcid.org/0000-0002-6346-8271
Yong DuanUC Davis Genome Center and Department of Biomedical Engineering , University of California, Davis , One Shields Avenue , Davis , California 95616 , United States.ORCID http://orcid.org/0000-0003-3793-5099

Funding

AMBER force field consortium: a coherent biomolecular simulation platformR01GM079383 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CIEPLAK, PIOTR, DUAN, YONG · 2007 to 2017
$4.7M
Multi-scaled Modeling of Electrostatic and Polarization Effects in BiomoleculesR35GM130367 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI RAY LUO · 2019 to 2026
$3.0M
AMBER/PBSA: An Open-Source Computer Program for Accurate and Scalable Solvation Analysis ofBiomoleculesR01GM093040 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LUO, RAY · 2010 to 2018
$2.2M
NIGMS NIH HHS R01 GM079383NIGMS NIH HHS R01 GM093040NIGMS NIH HHS R35 GM130367
6 · The paper itself

Abstract

A set of atomic polarizability parameters for a new polarizable Gaussian model (pGM) has been developed with the goal to accurately reproduce the polarizability anisotropy, taking advantage of its ability to attenuate all short-range electrostatic interactions, by fitting the ab initio molecular polarizability tensors ( A

Identifiers

PMID30645118
PMCPMC7197406

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.