Evidence map›Paper›PMID 30645113›Full record

ArticleJournal of medicinal chemistry2019

Synthesis and Biological Investigation of Phenothiazine-Based Benzhydroxamic Acids as Selective Histone Deacetylase 6 Inhibitors.

Katharina Vögerl, Nghia Ong, Johanna Senger, Daniel Herp, Karin Schmidtkunz, Martin Marek, Martin Müller, Karin Bartel, Tajith B Shaik, Nicholas J Porter and 6 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Intepirdine Derivatives Possessing Dual 5HT6 Antagonism / HDAC6 Inhibitory Activity.Chemistry (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Design, synthesis, biological andBiomedical reports · 2025
    Article
  9. Synthesis and biological evaluation ofJournal of enzyme inhibition and medicinal chemistry · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Divergent access to 5,6,7-perifused cycles.Nature communications · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Katharina VögerlDepartment of Pharmacy-Center for Drug Research , Ludwig-Maximilians University Munich , Butenandtstr. 5-13 , 81377 Munich , Germany.
Nghia OngDepartment of Pharmacy-Center for Drug Research , Ludwig-Maximilians University Munich , Butenandtstr. 5-13 , 81377 Munich , Germany.
Johanna SengerInstitute of Pharmaceutical Sciences , University of Freiburg , Albertstraße 25 , 79104 Freiburg , Germany.
Daniel HerpInstitute of Pharmaceutical Sciences , University of Freiburg , Albertstraße 25 , 79104 Freiburg , Germany.
Karin SchmidtkunzInstitute of Pharmaceutical Sciences , University of Freiburg , Albertstraße 25 , 79104 Freiburg , Germany.
Martin MarekDépartement de Biologie Structurale Intégrative, Institut de Génétique et Biologie Moléculaire et Cellulaire (IGBMC) , Université de Strasbourg (UDS), CNRS, INSERM , 67404 Illkirch Cedex , France.ORCID 0000-0001-7220-5644
Martin MüllerDepartment of Pharmacy-Center for Drug Research , Ludwig-Maximilians University Munich , Butenandtstr. 5-13 , 81377 Munich , Germany.
Karin BartelDepartment of Pharmacy-Center for Drug Research , Ludwig-Maximilians University Munich , Butenandtstr. 5-13 , 81377 Munich , Germany.
Tajith B ShaikDépartement de Biologie Structurale Intégrative, Institut de Génétique et Biologie Moléculaire et Cellulaire (IGBMC) , Université de Strasbourg (UDS), CNRS, INSERM , 67404 Illkirch Cedex , France.ORCID 0000-0001-6983-7966
Nicholas J PorterDepartment of Chemistry , University of Pennsylvania , 231 South 34th Street , Philadelphia , Pennsylvania 19104-6323 , United States.
Dina RobaaInstitute of Pharmacy , Martin-Luther University of Halle-Wittenberg , 06120 Halle/Saale , Germany.
David W ChristiansonDepartment of Chemistry , University of Pennsylvania , 231 South 34th Street , Philadelphia , Pennsylvania 19104-6323 , United States.ORCID 0000-0002-0194-5212
Christophe RomierDépartement de Biologie Structurale Intégrative, Institut de Génétique et Biologie Moléculaire et Cellulaire (IGBMC) , Université de Strasbourg (UDS), CNRS, INSERM , 67404 Illkirch Cedex , France.ORCID 0000-0002-3680-935X
Wolfgang SipplInstitute of Pharmacy , Martin-Luther University of Halle-Wittenberg , 06120 Halle/Saale , Germany.ORCID 0000-0002-5985-9261
Manfred JungInstitute of Pharmaceutical Sciences , University of Freiburg , Albertstraße 25 , 79104 Freiburg , Germany.ORCID 0000-0002-6361-7716
Franz BracherDepartment of Pharmacy-Center for Drug Research , Ludwig-Maximilians University Munich , Butenandtstr. 5-13 , 81377 Munich , Germany.ORCID 0000-0003-0009-8629
Ludwig-Maximilians-Universität München · DEUniversity of Freiburg · DECentre National de la Recherche Scientifique · FRMartin Luther University Halle-Wittenberg · DEUniversity of Pennsylvania · US

Funding

Structure and Function of MetalloenzymesR01GM049758 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIANSON, DAVID W · 1994 to 2025
$7.6M
STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
Predoctoral Training at the Chemistry-Biology InterfaceT32GM071339 · NIGMS · WISTAR INSTITUTE · PI MARMORSTEIN, RONEN, SPEICHER, DAVID W. · 2005 to 2019
$3.2M
NIGMS NIH HHS R01 GM049758NIGMS NIH HHS T32 GM008275NIGMS NIH HHS T32 GM071339
6 · The paper itself

Abstract

The phenothiazine system was identified as a favorable cap group for potent and selective histone deacetylase 6 (HDAC6) inhibitors. Here, we report the preparation and systematic variation of phenothiazines and their analogues containing a benzhydroxamic acid moiety as the zinc-binding group. We evaluated their ability to selectively inhibit HDAC6 by a recombinant HDAC enzyme assay, by determining the protein acetylation levels in cells by western blotting (tubulin vs histone acetylation), and by assessing their effects on various cancer cell lines. Structure-activity relationship studies revealed that incorporation of a nitrogen atom into the phenothiazine framework results in increased potency and selectivity for HDAC6 (more than 500-fold selectivity relative to the inhibition of HDAC1, HDAC4, and HDAC8), as rationalized by molecular modeling and docking studies. The binding mode was confirmed by co-crystallization of the potent azaphenothiazine inhibitor with catalytic domain 2 from Danio rerio HDAC6.

Indexed as

AcetylationAnimalsCatalytic DomainCells, CulturedCrystallography, X-RayHistone Deacetylase 6Histone Deacetylase InhibitorsHL-60 CellsHumansHydroxamic AcidsIn Vitro TechniquesMicrosomes, LiverMolecular Docking SimulationMolecular StructurePhenothiazinesStructure-Activity Relationshipbenzohydroxamic acidHDAC6 protein, humanHistone Deacetylase 6Histone Deacetylase InhibitorsHydroxamic AcidsphenothiazinePhenothiazines

Identifiers

PMID30645113
PMCPMC6519732
OpenAlexW2909709456

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.