Evidence map›Paper›PMID 30643282›Full record

ArticleNature chemical biology2019

IFITM3 directly engages and shuttles incoming virus particles to lysosomes.

Jennifer S Spence, Ruina He, Hans-Heinrich Hoffmann, Tandrila Das, Emmanuelle Thinon, Charles M Rice, Tao Peng, Kartik Chandran, Howard C Hang

Open access · bronzeAbstract read
In one paragraph

Article in Nature chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 162 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
162citing papers in PubMed, 2 pooled it
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

162 citing papers in PubMed, 2 syntheses or guidelines pooled it, 233 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Identification of AMOTL2 as an antiviral factor that enhances the human type I interferon response against Zika virus.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. The Procaine-Based ProcClusterInternational journal of molecular sciences · 2025
    Article

102 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Jennifer S SpenceDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA.
Ruina HeLaboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY, USA.
Hans-Heinrich HoffmannLaboratory of Virology and Infectious Disease, Center for the Study of Hepatitis C, The Rockefeller University, New York, NY, USA.
Tandrila DasLaboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY, USA.
Emmanuelle ThinonLaboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY, USA.
Charles M RiceLaboratory of Virology and Infectious Disease, Center for the Study of Hepatitis C, The Rockefeller University, New York, NY, USA.
Tao PengLaboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY, USA. pengtao@pkusz.edu.cn.
Kartik ChandranDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY, USA. kartik.chandran@einstein.yu.edu.ORCID http://orcid.org/0000-0003-0232-7077
Howard C HangLaboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY, USA. hhang@mail.rockefeller.edu.ORCID http://orcid.org/0000-0003-4053-5547
Rockefeller University · USAlbert Einstein College of Medicine · USPeking University Shenzhen Hospital · CN

Funding

Type I interferon-stimulated genes and the antiviral immune responseR01AI091707 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2011 to 2020
$5.5M
Studies on Protein LipidationR01GM087544 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI HANG, HOWARD C · 2010 to 2023
$4.4M
Host-virus interactions in the control of filovirus entryR01AI134824 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CHANDRAN, KARTIK · 2018 to 2021
$1.9M
Ebolavirus and marburgvirus entry into cellsR56AI088027 · NIAID · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CHANDRAN, KARTIK · 2017 to 2017
$512k
Distal gut microbiome targets of host anti-proteolytic proteins during colitisR21AI156674 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI HANG, HOWARD C · 2021 to 2022
$488k
NIAID NIH HHS R01 AI091707NIAID NIH HHS R01 AI134824NIAID NIH HHS R21 AI156674NIAID NIH HHS R56 AI088027NIGMS NIH HHS R01 GM087544
6 · The paper itself

Abstract

Interferon-induced transmembrane proteins (IFITMs 1, 2 and 3) have emerged as important innate immune effectors that prevent diverse virus infections in vertebrates. However, the cellular mechanisms and live-cell imaging of these small membrane proteins have been challenging to evaluate during viral entry of mammalian cells. Using CRISPR-Cas9-mediated IFITM-mutant cell lines, we demonstrate that human IFITM1, IFITM2 and IFITM3 act cooperatively and function in a dose-dependent fashion in interferon-stimulated cells. Through site-specific fluorophore tagging and live-cell imaging studies, we show that IFITM3 is on endocytic vesicles that fuse with incoming virus particles and enhances the trafficking of this pathogenic cargo to lysosomes. IFITM3 trafficking is specific to restricted viruses, requires S-palmitoylation and is abrogated with loss-of-function mutants. The site-specific protein labeling and live-cell imaging approaches described here should facilitate the functional analysis of host factors involved in pathogen restriction as well as their mechanisms of regulation.

Indexed as

A549 CellsAnimalsAntigens, DifferentiationAntiviral AgentsEndosomesHeLa CellsHumansLysosomesMembrane ProteinsOptical ImagingProtein TransportRNA-Binding ProteinsTransport VesiclesVirionVirus InternalizationAntigens, DifferentiationAntiviral AgentsIFITM2 protein, humanIFITM3 protein, humanleu-13 antigenMembrane ProteinsRNA-Binding Proteins

Identifiers

PMID30643282
PMCPMC6466627
OpenAlexW2906753872

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.