Evidence map›Paper›PMID 30643161›Full record

ArticleScientific reports2019

Analysis of potential strategies for cadmium stress tolerance revealed by transcriptome analysis of upland cotton.

Haodong Chen, Yujun Li, Xiongfeng Ma, Lishuang Guo, Yunxin He, Zhongying Ren, Zhengcheng Kuang, Xiling Zhang, Zhigang Zhang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 75 citations in OpenAlex.

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  15. Plants (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Haodong ChenCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China.
Yujun LiCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China.
Xiongfeng MaState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China.
Lishuang GuoCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China.
Yunxin HeCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China.
Zhongying RenState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China.
Zhengcheng KuangCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China.
Xiling ZhangState Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan, 455000, China. zhangxiling1962@126.com.
Zhigang ZhangCotton Sciences Research Institute of Hunan/ National Hybrid Cotton Research Promotion Center, Changde, Hunan, 415101, China. zhangzhig@126.com.
Cotton Research Institute · CNChinese Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, heavy metal pollution has become a more serious global problem, and all countries are actively engaged in finding methods to remediate heavy metal-contaminated soil. We conducted transcriptome sequencing of the roots of cotton grown under three different cadmium concentrations, and analysed the potential strategies for coping with cadmium stress. Through Gene Ontology analysis, we found that most of the genes differentially regulated under cadmium stress were associated with catalytic activity and binding action, especially metal iron binding, and specific metabolic and cellular processes. The genes responsive to cadmium stress were mainly related to membrane and response to stimulus. The KEGG pathways enriched differentially expressed genes were associated with secondary metabolite production, Starch and sucrose metabolism, flavonoid biosynthesis, phenylalanina metalism and biosynthesis, in order to improve the activity of antioxidant system, repair systems and transport system and reduction of cadmium toxicity. There are three main mechanisms by which cotton responds to cadmium stress: thickening of physical barriers, oxidation resistance and detoxification complexation. Meanwhile, identified a potential cotton-specific stress response pathway involving brassinolide, and ethylene signaling pathways. Further investigation is needed to define the specific molecular mechanisms underlying cotton tolerance to cadmium stress. In this study potential coping strategies of cotton root under cadmium stress were revealed. Our findings can guide the selection of cotton breeds that absorb high levels of cadmium.

Indexed as

Stress, PhysiologicalCadmiumGene Expression ProfilingGossypiumPlant RootsSoil PollutantsCadmiumSoil Pollutants

Identifiers

PMID30643161
PMCPMC6331580
OpenAlexW2910386283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.