Evidence map›Paper›PMID 30642575›Full record

ArticleLeukemia research2019

Predicting response to BET inhibitors using computational modeling: A BEAT AML project study.

Leylah M Drusbosky, Robinson Vidva, Saji Gera, Anjanasree V Lakshminarayana, Vijayashree P Shyamasundar, Ashish Kumar Agrawal, Anay Talawdekar, Taher Abbasi, Shireen Vali, Cristina E Tognon and 5 more

Abstract read
In one paragraph

Article in Leukemia research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Leylah M DrusboskyDepartment of Medicine/Division of Hematology Oncology, University of Florida, Gainesville, FL, United States.
Robinson VidvaCellworks Research India Pvt. Ltd, Bangalore, India.
Saji GeraCellworks Research India Pvt. Ltd, Bangalore, India.
Anjanasree V LakshminarayanaCellworks Research India Pvt. Ltd, Bangalore, India.
Vijayashree P ShyamasundarCellworks Research India Pvt. Ltd, Bangalore, India.
Ashish Kumar AgrawalCellworks Research India Pvt. Ltd, Bangalore, India.
Anay TalawdekarCellworks Research India Pvt. Ltd, Bangalore, India.
Taher AbbasiCellworks Group Inc., San Jose, CA, United States.
Shireen ValiCellworks Group Inc., San Jose, CA, United States.
Cristina E TognonKnight Cancer Institute, Division of Hematology and Medical Oncology, Oregon Health & Science University, Portland, OR, United States.
Stephen E KurtzKnight Cancer Institute, Division of Hematology and Medical Oncology, Oregon Health & Science University, Portland, OR, United States.
Jeffrey W TynerKnight Cancer Institute, Department of Cell, Developmental and Cancer Biology, Oregon Health and Science University, Portland, OR, United States.
Shannon K McWeeneyDivision of Bioinformatics and Computational Biology, Department of Medical Informatics and Clinical Epidemiology, Oregon Health & Science University, Portland, OR, United States.
Brian J DrukerKnight Cancer Institute, Division of Hematology and Medical Oncology, Oregon Health & Science University, Portland, OR, United States.
Christopher R CogleDepartment of Medicine/Division of Hematology Oncology, University of Florida, Gainesville, FL, United States. Electronic address: Christopher.cogle@medicine.ufl.edu.

Funding

Understanding the origins of rapid recurrence of pancreatic cancer after resectionP30CA069533 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Luiz Eduardo Bertassoni · 1997 to 2026
$60.5M
Tumor Intrinsic and Microenvironmental Mechanisms Driving Drug Combination Efficacy and Resistance in AMLU54CA224019 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Jeffrey Wallace Tyner · 2017 to 2026
$13.9M
Functional Genomic Discovery of Pathway Targeted and Immune Modulatory Therapeutic Combinations in Hematologic MalignanciesU01CA217862 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DRUKER, BRIAN J, TYNER, JEFFREY WALLACE · 2017 to 2021
$5.3M
NCI NIH HHS P30 CA069533NCI NIH HHS U01 CA217862NCI NIH HHS U54 CA224019
6 · The paper itself

Abstract

Despite advances in understanding the molecular pathogenesis of acute myeloid leukaemia (AML), overall survival rates remain low. The ability to predict treatment response based on individual cancer genomics using computational modeling will aid in the development of novel therapeutics and personalize care. Here, we used a combination of genomics, computational biology modeling (CBM), ex vivo chemosensitivity assay, and clinical data from 100 randomly selected patients in the Beat AML project to characterize AML sensitivity to a bromodomain (BRD) and extra-terminal (BET) inhibitor. Computational biology modeling was used to generate patient-specific protein network maps of activated and inactivated protein pathways translated from each genomic profile. Digital drug simulations of a BET inhibitor (JQ1) were conducted by quantitatively measuring drug effect using a composite AML disease inhibition score. 93% of predicted disease inhibition scores matched the associated ex vivo IC

Indexed as

Models, MolecularMolecular Targeted TherapyAntineoplastic AgentsChromosome AberrationsComputational BiologyDatabases, FactualGene Expression Regulation, NeoplasticHumansLeukemia, Myeloid, AcuteTranscription FactorsAntineoplastic AgentsTranscription FactorsAMLBET inhibitorComputational modelingDrug responseGeneticsJQ1

Identifiers

PMID30642575
PMCPMC6442457

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.