Evidence map›Paper›PMID 30642273›Full record

ArticleBMC medical genetics2019

A possible founder mutation in FZD6 gene in a Turkish family with autosomal recessive nail dysplasia.

Ceren Saygı, Yasemin Alanay, Uğur Sezerman, Aslı Yenenler, Nesrin Özören

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. The development of hair follicles and nail.Developmental biology · 2024
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ceren SaygıDepartment of Molecular Biology and Genetics, Boğaziçi University, Istanbul, Turkey.
Yasemin AlanayPediatric Genetics Unit, Department of Pediatrics, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Uğur SezermanDepartment of Medical Statistics and Bioinformatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Aslı YenenlerDepartment of Medical Statistics and Bioinformatics, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Nesrin ÖzörenDepartment of Molecular Biology and Genetics, Boğaziçi University, Istanbul, Turkey. nesrin.ozoren@boun.edu.tr.ORCID 0000-0002-8580-618X
Kent Hastanesi · TRBoğaziçi University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAutosomal recessive nail dysplasia is characterized by thick and hard nails with a very slow growth on the hands and feet. Mutations in FZD6 gene were found to be associated with autosomal recessive nail dysplasia in 2011. Presently, only seven mutations have been reported in FZD6 gene; five mutations are clustered in the C-terminus, one is at the seventh transmembrane domain, and another is at the very beginning of third extracellular loop.

methodsWhole exome sequencing (WES) was applied to the index case, her one affected sister and her healthy consanguineous parents. The mutation was verified via Sanger sequencing. Molecular dynamics simulations of the predicted structures of native and mutant proteins were compared to gain insight into the pathogenicity mechanism of the mutation.

resultsHere, we report a homozygous 8 bp deletion mutation, p.Gly559Aspfs*16; c.1676_1683delGAACCAGC, in FZD6 gene which causes a frameshift and creates a premature stop codon at position 16 of the new reading frame. Our molecular dynamics calculations predict that the pathogenicity of this frameshift mutation may be caused by the change in entropy of the protein with negative manner, disturbing the C-terminal domain structure, and hence interaction partners of FZD6.

conclusionWe identified a homozygous deletion mutation in FZD6 in a consanguineous Turkish family with nail dysplasia. We also provide a molecular mechanism about the effects of the deletion on the protein structure and its possible motions. This study provides a pathogenicity mechanism for this mutation in nail dysplasia for the first time.

Indexed as

Genetic Predisposition to DiseaseMutationAdultAmino Acid SequenceCodon, NonsenseConsanguinityFemaleFrameshift MutationFrizzled ReceptorsGenetic Association StudiesHomozygoteHumansModels, MolecularNails, MalformedPedigreeProtein ConformationCodon, NonsenseFrizzled ReceptorsFZD6 protein, humanAutosomal recessiveConsanguinityFZD6Nail dysplasiaTurkeyWhole exome sequencing

Identifiers

PMID30642273
PMCPMC6332616
OpenAlexW2946965809

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.