Evidence map›Paper›PMID 30642244›Full record

ArticleBMC genomics2019

Translocation of a parthenogenesis gene candidate to an alternate carrier chromosome in apomictic Brachiaria humidicola.

Margaret Worthington, Masumi Ebina, Naoki Yamanaka, Christopher Heffelfinger, Constanza Quintero, Yeny Patricia Zapata, Juan Guillermo Perez, Michael Selvaraj, Manabu Ishitani, Jorge Duitama and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
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  9. BABY BOOM regulates early embryo and endosperm development.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
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  16. An Overview of the Genetics and Genomics of theFrontiers in plant science · 2021
    Review
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 3 countries.

Margaret WorthingtonInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia. mlworthi@uark.edu.ORCID http://orcid.org/0000-0001-8019-165X
Masumi EbinaNational Agriculture and Food Research Organization (NARO), Institute of Livestock and Grassland Science, Nasushiobara, Tochigi, 392-2793, Japan.
Naoki YamanakaJapan International Research Center for Agricultural Sciences (JIRCAS), 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan.
Christopher HeffelfingerDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, 06520, USA.
Constanza QuinteroInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Yeny Patricia ZapataInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Juan Guillermo PerezInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Michael SelvarajInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Manabu IshitaniInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Jorge DuitamaInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Juan Fernando de la HozInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Idupulapati RaoInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Stephen DellaportaDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT, 06520, USA.
Joe TohmeInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
Jacobo ArangoInternational Center for Tropical Agriculture (CIAT), A.A. 6713, Cali, Colombia.
International Center for Tropical Agriculture · COYale University · USJapan International Research Center for Agricultural Sciences · JPNational Agriculture and Food Research Organization · JPNational Center for Agricultural Utilization Research · USUniversidad de Los Andes · COUniversity of California, Los Angeles · US

Funding

YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
High Performance Computing Instrumentation for Yale University Biomedical HPC CenS10RR029676 · NCRR · YALE UNIVERSITY · PI BJORNSON, ROBERT DEAN · 2011 to 2011
$588k
BMZ 11.7860.7-001.00National Science Foundation 1419501National Science Foundation 1444478NCRR NIH HHS S10 RR019895NCRR NIH HHS S10 RR029676NIH HHS RR-029676-01NIH HHS RR-19895
6 · The paper itself

Abstract

backgroundThe apomictic reproductive mode of Brachiaria (syn. Urochloa) forage species allows breeders to faithfully propagate heterozygous genotypes through seed over multiple generations. In Brachiaria, reproductive mode segregates as single dominant locus, the apospory-specific genomic region (ASGR). The AGSR has been mapped to an area of reduced recombination on Brachiaria decumbens chromosome 5. A primer pair designed within ASGR-BABY BOOM-like (BBML), the candidate gene for the parthenogenesis component of apomixis in Pennisetum squamulatum, was diagnostic for reproductive mode in the closely related species B. ruziziensis, B. brizantha, and B. decumbens. In this study, we used a mapping population of the distantly related commercial species B. humidicola to map the ASGR and test for conservation of ASGR-BBML sequences across Brachiaria species.

resultsDense genetic maps were constructed for the maternal and paternal genomes of a hexaploid (2n = 6x = 36) B. humidicola F

conclusionsThe first dense molecular maps of B. humidicola provide strong support for cytogenetic evidence indicating a base chromosome number of six in this species. Furthermore, these results show conservation of the ASGR across the Paniceae in different chromosomal backgrounds and support postulation of the ASGR-BBML as candidate genes for the parthenogenesis component of apomixis.

Indexed as

ApomixisChromosome MappingBrachiariaChromosomes, PlantGenomicsKaryotypingParthenogenesisTranslocation, GeneticAneuploidyApomixisAposporyBABY BOOMBrachiariaGenotyping-by-sequencingMolecular karyotypingParthenogenesisSegmental allopolyploidyUrochloa

Identifiers

PMID30642244
PMCPMC6332668
OpenAlexW2921072076

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.