Evidence map›Paper›PMID 30642035›Full record

ArticleViruses2019

Proteogenomics Uncovers Critical Elements of Host Response in Bovine Soft Palate Epithelial Cells Following In Vitro Infection with Foot-And-Mouth Disease Virus.

Florian Pfaff, Sara Hägglund, Martina Zoli, Sandra Blaise-Boisseau, Eve Laloy, Susanne Koethe, Daniela Zühlke, Katharina Riedel, Stephan Zientara, Labib Bakkali-Kassimi and 4 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Florian PfaffInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. Florian.Pfaff@fli.de.ORCID 0000-0003-0178-6183
Sara HägglundSwedish University of Agricultural Sciences, Host-pathogen interaction group, Division of Ruminant Medicine, 75007 Uppsala, Sweden. sara.hagglund@slu.se.
Martina ZoliInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. martina.zoli2811@gmail.com.ORCID 0000-0002-7573-2594
Sandra Blaise-BoisseauLaboratoire de Santé Animale de Maisons-Alfort, UMR 1161 virologie, INRA, Ecole Nationale Vétérinaire d'Alfort, ANSES, Université Paris-Est, 94700 Maisons-Alfort, France. sandra.blaise-boisseau@anses.fr.
Eve LaloyLaboratoire de Santé Animale de Maisons-Alfort, UMR 1161 virologie, INRA, Ecole Nationale Vétérinaire d'Alfort, ANSES, Université Paris-Est, 94700 Maisons-Alfort, France. eve.laloy@vet-alfort.fr.ORCID 0000-0001-9254-8791
Susanne KoetheInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. Susanne.Koethe@fli.de.
Daniela ZühlkeInstitute of Microbiology, Department for Microbial Physiology and Molecular Biology, University of Greifswald, 17489 Greifswald, Germany. daniela.zuehlke@uni-greifswald.de.
Katharina RiedelInstitute of Microbiology, Department for Microbial Physiology and Molecular Biology, University of Greifswald, 17489 Greifswald, Germany. riedela@uni-greifswald.de.
Stephan ZientaraLaboratoire de Santé Animale de Maisons-Alfort, UMR 1161 virologie, INRA, Ecole Nationale Vétérinaire d'Alfort, ANSES, Université Paris-Est, 94700 Maisons-Alfort, France. stephan.zientara@vet-alfort.fr.
Labib Bakkali-KassimiLaboratoire de Santé Animale de Maisons-Alfort, UMR 1161 virologie, INRA, Ecole Nationale Vétérinaire d'Alfort, ANSES, Université Paris-Est, 94700 Maisons-Alfort, France. Labib.BAKKALI-KASSIMI@anses.fr.
Jean-François ValarcherSwedish University of Agricultural Sciences, Host-pathogen interaction group, Division of Ruminant Medicine, 75007 Uppsala, Sweden. jean-francois.valarcher@slu.se.ORCID 0000-0002-8564-5603
Dirk HöperInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. Dirk.Hoeper@fli.de.ORCID 0000-0001-8408-2274
Martin BeerInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. Martin.Beer@fli.de.
Michael EschbaumerInstitute of Diagnostic Virology, Friedrich-Loeffler-Institut, Federal Research Institute for Animal Health, 17493 Greifswald, Germany. Michael.Eschbaumer@fli.de.ORCID 0000-0002-1104-0695
Friedrich-Loeffler-Institut · DEÉcole Nationale Vétérinaire d'Alfort · FRSwedish University of Agricultural Sciences · SEUniversität Greifswald · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Foot-and-mouth disease (FMD) is the most devastating disease of cloven-hoofed livestock, with a crippling economic burden in endemic areas and immense costs associated with outbreaks in free countries. Foot-and-mouth disease virus (FMDV), a picornavirus, will spread rapidly in naïve populations, reaching morbidity rates of up to 100% in cattle. Even after recovery, over 50% of cattle remain subclinically infected and infectious virus can be recovered from the nasopharynx. The pathogen and host factors that contribute to FMDV persistence are currently not understood. Using for the first time primary bovine soft palate multilayers in combination with proteogenomics, we analyzed the transcriptional responses during acute and persistent FMDV infection. During the acute phase viral RNA and protein was detectable in large quantities and in response hundreds of interferon-stimulated genes (ISG) were overexpressed, mediating antiviral activity and apoptosis. Although the number of pro-apoptotic ISGs and the extent of their regulation decreased during persistence, some ISGs with antiviral activity were still highly expressed at that stage. This indicates a long-lasting but ultimately ineffective stimulation of ISGs during FMDV persistence. Furthermore, downregulation of relevant genes suggests an interference with the extracellular matrix that may contribute to the skewed virus-host equilibrium in soft palate epithelial cells.

Indexed as

Host-Pathogen InteractionsProteogenomicsAnimalsApoptosisCattleCattle DiseasesCells, CulturedComputational BiologyDown-RegulationEpithelial CellsFoot-and-Mouth DiseaseFoot-and-Mouth Disease VirusGene ExpressionGene Expression ProfilingImmunity, InnateInterferonsInterferonsRNA, Viralbioinformaticsbovine soft palatefoot-and-mouth disease virus (FMDV)innate immune systeminterferon-stimulated genes (ISG)nasopharynxproteomicstranscriptomicsvirus-host interaction

Identifiers

PMID30642035
PMCPMC6356718
OpenAlexW2908827294

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.