Evidence map›Paper›PMID 30640915›Full record

Observational studyPloS one2019

ESBL colonization and acquisition in a hospital population: The molecular epidemiology and transmission of resistance genes.

Stefan Hagel, Oliwia Makarewicz, Anita Hartung, Daniel Weiß, Claudia Stein, Christian Brandt, Ulrike Schumacher, Ralf Ehricht, Vladimir Patchev, Mathias W Pletz

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 60 citations in OpenAlex.

  1. Pooled it
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  7. Review
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  13. The transmission risk of multidrug-resistant organisms between hospital patients and their pets - a case-control study, Germany, 2019 to 2022.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article
  14. Article
  15. Article
  16. The Impact of COVID-19 Pandemic on ESBL-ProducingAntibiotics (Basel, Switzerland) · 2023
    Article
  17. [Therapy-relevant antibiotic resistances in a One Health context].Bundesgesundheitsblatt, Gesundheitsforschung, Gesundheitsschutz · 2023
    Review
  18. Review
  19. Evolving trends amongFrontiers in public health · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Stefan HagelInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.
Oliwia MakarewiczInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.ORCID 0000-0002-4404-1862
Anita HartungInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.ORCID 0000-0002-6262-3946
Daniel WeißInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.ORCID 0000-0003-0706-3031
Claudia SteinInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.
Christian BrandtInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.
Ulrike SchumacherCenter for Clinical Studies, Jena University Hospital, Jena, Germany.ORCID 0000-0002-4546-8497
Ralf EhrichtInfectognostics Research Campus, Jena, Germany.
Vladimir PatchevInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.
Mathias W PletzInstitute of Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany.ORCID 0000-0001-8157-2753
Jena University Hospital · DEAbbott (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A prospective cohort study (German Clinical Trial Registry, No. 00005273) was performed to determine pre-admission colonization rates, hospital acquisition risk factors, subsequent infection rates and colonization persistence including the respective molecular epidemiology and transmission rates of extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae (EPE). A total of 342 EPEs were isolated from rectal swabs of 1,334 patients on admission, at discharge and 6 months after hospitalization. Inclusion criteria were patients' age > 18 years, expected length of stays > 48 hours, external referral. The EPEs were characterized by routine microbiological methods, a DNA microarray and ERIC-PCR. EPE colonization was found in 12.7 % of admitted patients, with the highest rate (23.8 %) in patients from nursing homes. During hospitalization, 8.1 % of the patients were de novo EPE colonized, and invasive procedures, antibiotic and antacid therapies were independent risk factors. Only 1/169 patients colonized on admission developed a hospital-acquired EPE infection. Escherichia coli was the predominant EPE (88.9 %), and 92.1% of the ESBL phenotypes could be related to CTX-M variants with CTX-M-1/15 group being most frequent (88.9%). A corresponding β-lactamase could not be identified in five isolates. Hospital-acquired EPE infections in patients colonized before or during hospitalization were rare. The diversity of the EPE strains was much higher than that of the underlying plasmids. In seven patients, transmission of the respective plasmid across different species could be observed indicating that the current strain-based surveillance approaches may underestimate the risk of inter-species transmission of resistance genes.

Indexed as

Genes, BacterialHospitalsbeta-LactamasesColony Count, MicrobialDrug Resistance, BacterialEnterobacteriaceaeEnterobacteriaceae InfectionsFollow-Up StudiesHumansMolecular EpidemiologyPatient AdmissionPatient DischargePlasmidsRisk Factorsbeta-Lactamases

Identifiers

PMID30640915
PMCPMC6331103
OpenAlexW2909957876

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.