Evidence map›Paper›PMID 30639240›Full record

ArticleMolecular cell2019

Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.

Daan C Swarts, Martin Jinek

Abstract read
In one paragraph

Article in Molecular cell, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 247 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
247citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

247 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Architecture of a DNA-guided Cas12a.Nature structural & molecular biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Molecular mechanisms and biotechnology applications of CRISPR-Cas12a.Nature reviews. Molecular cell biology · 2026
    Review
  12. Rapid On-Site Detection ofFoods (Basel, Switzerland) · 2026
    Article
  13. Article
  14. Article
  15. Rapid Cas13a-basedmSphere · 2026
    Article
  16. Review
  17. Review
  18. Article
  19. SDS-CRISPR for Single-Nucleotide Variant Detection.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  20. Article

187 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Daan C SwartsDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland.
Martin JinekDepartment of Biochemistry, University of Zurich, 8057 Zurich, Switzerland. Electronic address: jinek@bioc.uzh.ch.

Funding

Swiss National Science Foundation 149393Swiss National Science Foundation 182567
6 · The paper itself

Abstract

CRISPR-Cas12a (Cpf1) is an RNA-guided DNA-cutting nuclease that has been repurposed for genome editing. Upon target DNA binding, Cas12a cleaves both the target DNA in cis and non-target single-stranded DNAs (ssDNAs) in trans. To elucidate the molecular basis for both DNase cleavage modes, we performed structural and biochemical studies on Francisella novicida Cas12a. We show that guide RNA-target strand DNA hybridization conformationally activates Cas12a, triggering its trans-acting, non-specific, single-stranded DNase activity. In turn, cis cleavage of double-stranded DNA targets is a result of protospacer adjacent motif (PAM)-dependent DNA duplex unwinding, electrostatic stabilization of the displaced non-target DNA strand, and ordered sequential cleavage of the non-target and target DNA strands. Cas12a releases the PAM-distal DNA cleavage product and remains bound to the PAM-proximal DNA cleavage product in a catalytically competent, trans-active state. Together, these results provide a revised model for the molecular mechanisms of both the cis- and the trans-acting DNase activities of Cas12a enzymes, enabling their further exploitation as genome editing tools.

Indexed as

CRISPR-Cas SystemsBacterial ProteinsCRISPR-Associated ProteinsDNA, Single-StrandedEnzyme ActivationFrancisellaGene EditingModels, MolecularNucleic Acid ConformationProtein ConformationRNA, Guide, CRISPR-Cas SystemsStructure-Activity RelationshipSubstrate SpecificityBacterial ProteinsCRISPR-Associated ProteinsDNA, Single-StrandedRNA, Guide, CRISPR-Cas SystemsCas12aCas9Cpf1CRISPR-CasDNA cleavageDNasegenetic engineeringgenome editingPAMssDNase

Identifiers

PMID30639240
PMCPMC6858279

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.