Evidence map›Paper›PMID 30638025›Full record

ArticleThe journal of physical chemistry. B2019

Dynamical Effects of Trimethylamine N-Oxide on Aqueous Solutions of Urea.

Xiaojing Teng, Toshiko Ichiye

Abstract read
In one paragraph

Article in The journal of physical chemistry. B, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Dynamical Model for the Counteracting Effects of TrimethylamineThe journal of physical chemistry. B · 2020
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Xiaojing TengDepartment of Chemistry , Georgetown University , Washington, D.C. 20057 , United States.ORCID 0000-0002-4068-0157
Toshiko IchiyeDepartment of Chemistry , Georgetown University , Washington, D.C. 20057 , United States.ORCID 0000-0003-2474-5253
Georgetown University · US

Funding

Computational Studies of the Molecular Basis of Natural and Acquired Resistance to Extremes in MicrobesR01GM122441 · NIGMS · GEORGETOWN UNIVERSITY · PI SWIFT, JENNIFER A · 2017 to 2022
$1.8M
NIGMS NIH HHS R01 GM122441
6 · The paper itself

Abstract

Trimethylamine N-oxide (TMAO) stabilizes protein structures, whereas urea destabilizes proteins, and their opposing effects can be counteracted at a 1:2 ratio of TMAO to urea. To investigate how they affect solution dynamics, molecular dynamics simulations have been carried out for aqueous solutions of TMAO and urea at different concentrations. In the binary solutions, urea mainly slows the diffusion of waters that are hydrogen bonded to it (i.e., hydration water), whereas TMAO dramatically slows the diffusion of both hydration water and bulk water because of long-lived TMAO-water hydrogen bonds. In the ternary solutions, because TMAO decreases the diffusion rate of bulk water, the lifetimes of not only water-water but also urea-water hydrogen bonds increase. In addition, the constant forming and breaking of short lifetime hydrogen bonds between urea and water appears to impart energy into the bulk, whereas the long lifetime hydrogen bonds between TMAO and water slows down the bulk, resulting in the compensating effects on bulk water in the ternary solution. This suggests that the counteracting effects of TMAO on urea denaturation may be both to make longer lived hydrogen bonds to water and to counter the energizing effects of urea on bulk water.

Indexed as

DiffusionHydrogen BondingMethylaminesMolecular Dynamics SimulationSolutionsUreaWaterMethylaminesSolutionstrimethyloxamineUreaWater

Identifiers

PMID30638025
PMCPMC7085122
OpenAlexW2909677506

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.