Evidence map›Paper›PMID 30637648›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2019

Improved blood culture workflow for faster identification of KPC-producing Enterobacterales.

Bruna Mara Silva Seco, Juliana Coutinho Campos, Darlan Augusto da Costa Rocha, Aline Valerio de Lima, Fernanda Filomena de Oliveira, Mara Elisa Borsato Lemo, Suely Carlos Ferreira Sampaio, Jorge Luiz Mello Sampaio

Abstract readEvaluation Study
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Bruna Mara Silva SecoSchool of Pharmacy, Clinical Microbiology and Antimicrobial Resistance Laboratory, University of São Paulo, Av. Professor Lineu Prestes, 580, São Paulo, SP, Zip code 05508-900, Brazil.
Juliana Coutinho CamposSchool of Pharmacy, Clinical Microbiology and Antimicrobial Resistance Laboratory, University of São Paulo, Av. Professor Lineu Prestes, 580, São Paulo, SP, Zip code 05508-900, Brazil.
Darlan Augusto da Costa RochaSchool of Pharmacy, Clinical Microbiology and Antimicrobial Resistance Laboratory, University of São Paulo, Av. Professor Lineu Prestes, 580, São Paulo, SP, Zip code 05508-900, Brazil.
Aline Valerio de LimaSchool of Pharmacy, Clinical Microbiology and Antimicrobial Resistance Laboratory, University of São Paulo, Av. Professor Lineu Prestes, 580, São Paulo, SP, Zip code 05508-900, Brazil.
Fernanda Filomena de OliveiraFleury Medicine and Health, Microbiology Section, São Paulo, Brazil.
Mara Elisa Borsato LemoFleury Medicine and Health, Microbiology Section, São Paulo, Brazil.
Suely Carlos Ferreira SampaioSanta Casa de São Paulo School of Medical Sciences, São Paulo, Brazil.
Jorge Luiz Mello SampaioSchool of Pharmacy, Clinical Microbiology and Antimicrobial Resistance Laboratory, University of São Paulo, Av. Professor Lineu Prestes, 580, São Paulo, SP, Zip code 05508-900, Brazil. sampaio@usp.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Carba-NP original report for blood cultures described the need of subculture and mechanical lysis before testing, reaching the turnaround time of approximately 4 hours for sample preparation. We tested 100 consecutive blood cultures positive for Gram-negative bacilli on the Gram stain from a large clinical laboratory. Bacterial pellets were prepared by centrifugation and submitted to Carba-NP and Blue-Carba tests and used further to prepare smears for Vitek MS. Results obtained with colonies grown on sheep blood agar using the same methodologies were used as the gold standard. Carbapenemase genes were confirmed by PCR and DNA sequencing. Vitek MS identified correctly 86% of the samples. Of note, 7% of the samples were incorrectly reported by the instrument as containing a single isolate. KPC-2 was the predominant carbapenemase detected. There was 100% concordance for both negative and positive results for Carba-NP. In contrast, for Blue-Carba the concordance for positive results was 92.8%, and 41% of strains negative for carbapenemases presented a yellowish color on control well turning the test non-interpretable. The turnaround time for sample preparation for preparing the pellet was 13 min, and no subculture or mechanical lysis is needed when detecting KPC production in Enterobacterales.

Indexed as

Bacterial Proteinsbeta-LactamasesBlood CultureEnterobacteriaceaeEnterobacteriaceae InfectionsHumansPolymerase Chain ReactionSensitivity and SpecificityWorkflowBacterial Proteinsbeta-lactamase KPC-2beta-LactamasesBlood cultureBlue-CarbaCarba-NPCarbapenemasesKPC

Identifiers

PMID30637648
PMCPMC6863267

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.