Evidence map›Paper›PMID 30635784›Full record

ArticleMolecular genetics and genomics : MGG2019

Genomic copy number variation of the CHKB gene alters gene expression and affects growth traits of Chinese domestic yak (Bos grunniens) breeds.

Habtamu Abera Goshu, Min Chu, Wu Xiaoyun, Bao Pengjia, Ding Xue Zhi, Ping Yan

Abstract read
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In one paragraph

Article in Molecular genetics and genomics : MGG, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

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3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 2 countries.

Habtamu Abera GoshuLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China. habtamu2016@yahoo.com.ORCID http://orcid.org/0000-0003-2693-0540
Min ChuLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China.
Wu XiaoyunLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China.
Bao PengjiaLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China.
Ding Xue ZhiLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China.
Ping YanLanzhou Institute of Husbandry and Pharmaceutical Sciences, Key Laboratory of Yak Breeding Engineering of Gansu Province, Chinese Academy of Agricultural Science, Lanzhou, 730050, Gansu, China. pingyanlz@163.com.
Lanzhou Institute of Husbandry and Pharmaceutical Sciences · CN

Funding

Chinese Academy of Agricultural Sciences CAAS-ASTIP-2014-LIHPS-01
6 · The paper itself

Abstract

Copy number variation (CNV) influences the mRNA transcription levels and phenotypic traits through gene dosage, position effects, alteration of downstream pathways, and modulation of the structure and position of chromosomes. A previous study using the read depth approach to genome resequencing analysis revealed CNVs of the choline kinase beta (CHKB) gene in the copy number variable regions (CNVRs) of yak breeds may influence muscle development and therefore the phenotypic traits of yak breeds. Further work is required to attain a more complete understanding and validate the importance of the detected CNVR of the CHKB gene found in yak breeds, because there is no association studies of the CHKB gene with yak growth traits that have been reported. The goal of this study was to determine the distribution of CHKB copy numbers in five Chinese domestic yak breeds and evaluate their impact on gene expression and growth traits. The data were analyzed using real-time quantitative PCR. In this study, the normal CNV of the CHKB gene was found to be significantly (p < 0.05) associated with greater chest girth and body weight for three age groups of Datong yaks. Our results indicated that the copy number of the CHKB gene is negatively correlated with the mRNA expression level. From this result, we conclude that CNVs of the CHKB gene could be novel markers for growth traits of Chinese domestic yak breeds and might therefore provide a novel opportunity to utilize data on CNVs in designing molecular markers for the selection of animal breeding programs for larger populations of various yaks.

Indexed as

DNA Copy Number VariationsGene Expression Regulation, DevelopmentalAnimalsAnimals, DomesticBody WeightBreedingCattleChinaCholine KinaseGeographySpecies SpecificityCholine KinaseCHKB geneCopy number variationExpression analysisGrowth traitsYaks

Identifiers

PMID30635784
OpenAlexW2909124674

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.