Evidence map›Paper›PMID 30635634›Full record

ArticleLeukemia2019

TP53 mutation status divides myelodysplastic syndromes with complex karyotypes into distinct prognostic subgroups.

Detlef Haase, Kristen E Stevenson, Donna Neuberg, Jaroslaw P Maciejewski, Aziz Nazha, Mikkael A Sekeres, Benjamin L Ebert, Guillermo Garcia-Manero, Claudia Haferlach, Torsten Haferlach and 41 more

Registry-linked trialAbstract read
In one paragraph

Article in Leukemia, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04889729 (Genomic and Personalized Medicine for All), which is not on this map. Cited by 137 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
137citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04889729 unknown statusnot on this mapstarted 2021, after this paper: background citation

Genomic and Personalized Medicine for All (GENOMED4ALL): Application of Artificial Intelligence to Improve Disease Classification and Prognosis in Myelodysplastic Syndrome.

TypeobservationalSponsorIstituto Clinico HumanitasRan2021 to 2024Enrolled13,284ConditionsMyelodysplastic Syndromes
3 · Its place in the literature

Who cites it

137 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Guideline
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  3. Eprenetapopt (APR-246) and Azacitidine inJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
    Trial
  4. Eprenetapopt Plus Azacitidine inJournal of clinical oncology : official journal of the American Society of Clinical Oncology · 2021
    Trial
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77 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

51 authors.

Detlef HaaseUniversity Medical Center, Georg- August-University, Goettingen, Germany.
Kristen E StevensonDana-Farber Cancer Institute, Boston, MA, USA.
Donna NeubergDana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-2566-3145
Jaroslaw P MaciejewskiCleveland Clinic Taussig Cancer Center, Cleveland, OH, USA.
Aziz NazhaCleveland Clinic Taussig Cancer Center, Cleveland, OH, USA.
Mikkael A SekeresCleveland Clinic Taussig Cancer Center, Cleveland, OH, USA.
Benjamin L EbertDana-Farber Cancer Institute, Boston, MA, USA.
Guillermo Garcia-ManeroUniversity of Texas MD Anderson Cancer Center, Houston, TX, USA.
Claudia HaferlachMLL Munich Leukemia Laboratory, Munich, Germany.
Torsten HaferlachMLL Munich Leukemia Laboratory, Munich, Germany.
Wolfgang KernMLL Munich Leukemia Laboratory, Munich, Germany.
Seishi OgawaKyoto University, Kyoto, Japan.
Yasunobu NagataCleveland Clinic Taussig Cancer Center, Cleveland, OH, USA.
Kenichi YoshidaKyoto University, Kyoto, Japan.
Timothy A GraubertMassachusetts General Hospital Cancer Center, Boston, MA, USA.
Matthew J WalterWashington University School of Medicine, St. Louis, MO, USA.ORCID http://orcid.org/0000-0002-7753-1091
Alan F ListH. Lee Moffitt Cancer Center and Research Institute, Tampa Bay, FL, USA.
Rami S KomrokjiH. Lee Moffitt Cancer Center and Research Institute, Tampa Bay, FL, USA.
Eric PadronH. Lee Moffitt Cancer Center and Research Institute, Tampa Bay, FL, USA.
David SallmanH. Lee Moffitt Cancer Center and Research Institute, Tampa Bay, FL, USA.
Elli PapaemmanuilMemorial Sloan Kettering Cancer Center, New York, NY, USA.
Peter J CampbellWellcome Trust Sanger Institute, Cambridge, UK.
Michael R SavonaVanderbilt-Ingram Cancer Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0003-3763-5504
Adam SeegmillerVanderbilt-Ingram Cancer Center, Nashville, TN, USA.
Lionel AdèsHôpital St Louis, Assistance Publique-Hôpitaux de Paris and Paris Diderot University, Paris, France.
Pierre FenauxHôpital St Louis, Assistance Publique-Hôpitaux de Paris and Paris Diderot University, Paris, France.
Lee-Yung ShihChang Gung Memorial Hospital and Chang Gung University, Taoyuan, Taiwan.ORCID http://orcid.org/0000-0003-1866-7922
David BowenSt. James's Institute of Oncology, Leeds Teaching Hospitals, Leeds, UK.
Michael J GrovesUniversity of Dundee, Ninewells Hospital, Dundee, UK.
Sudhir TauroUniversity of Dundee, Ninewells Hospital, Dundee, UK.
Michaela FontenayUniversité Paris Descartes, Hopital Cochin Assistance Publique-Hopitaux de Paris, Paris, France.
Olivier KosmiderUniversité Paris Descartes, Hopital Cochin Assistance Publique-Hopitaux de Paris, Paris, France.
Michal Bar-NatanTisch Cancer Institute, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
David SteensmaDana-Farber Cancer Institute, Boston, MA, USA.
Richard StoneDana-Farber Cancer Institute, Boston, MA, USA.
Michael HeuserHannover Medical School, Hannover, Germany.
Felicitas TholHannover Medical School, Hannover, Germany.
Mario CazzolaFondazione IRCCS Policlinico San Matteo & University of Pavia, Pavia, Italy.
Luca MalcovatiFondazione IRCCS Policlinico San Matteo & University of Pavia, Pavia, Italy.
Aly KarsanUniversity of British Columbia, Vancouver, BC, Canada.
Christina GansterUniversity Medical Center, Georg- August-University, Goettingen, Germany.
Eva Hellström-LindbergKarolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.
Jacqueline BoultwoodRadcliffe Department of Medicine, University of Oxford, Oxford, UK.
Andrea PellagattiRadcliffe Department of Medicine, University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0002-6122-0221
Valeria SantiniMDS Unit, AOU Careggi, University of Florence, Florence, Italy.
Lynn QuekMRC Molecular Hematology Unit, WIMM University of Oxford, Oxford, UK.
Paresh VyasMRC Molecular Hematology Unit, WIMM University of Oxford, Oxford, UK.ORCID http://orcid.org/0000-0003-3931-0914
Heinz TüchlerLudwig-Boltzmann Institute for Leukemia Research, Vienna, Austria.
Peter L GreenbergStanford University Cancer Institute, Stanford, CA, USA.
Rafael BejarUC San Diego Moores Cancer Center, La Jolla, CA, USA. rabejar@ucsd.edu.ORCID http://orcid.org/0000-0002-5603-4598
International Working Group for MDS Molecular Prognostic Committee

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Specimen Acquistition and Expression ProfilingP01CA101937 · NCI · WASHINGTON UNIVERSITY · PI LEY, TIMOTHY J. · 2003 to 2023
$58.8M
TRANSLATIONAL RESEARCH ONCOLOGY TRAINING GRANTK12CA076917 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI GERSON, STANTON L. · 1997 to 2022
$14.2M
Targeting SYK Kinase in AMLP50CA206963 · NCI · DANA-FARBER CANCER INST · PI ASTER, JON C. · 2017 to 2021
$10.6M
Characterization of Genetic Abnormalities in MDS and Their Clinical ImpactK08DK091360 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BEJAR, RAFAEL · 2012 to 2016
$789k
Medical Research Council G1000729Medical Research Council G1000729/94931Medical Research Council MC_U137961146Medical Research Council MC_UU_00016/11Medical Research Council MC_UU_12009/11Medical Research Council MR/L008963/1Medical Research Council MR/R007608/1NCI NIH HHS K12 CA076917NCI NIH HHS P01 CA101937NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA206963NIDDK NIH HHS K08 DK091360
6 · The paper itself

Abstract

Risk stratification is critical in the care of patients with myelodysplastic syndromes (MDS). Approximately 10% have a complex karyotype (CK), defined as more than two cytogenetic abnormalities, which is a highly adverse prognostic marker. However, CK-MDS can carry a wide range of chromosomal abnormalities and somatic mutations. To refine risk stratification of CK-MDS patients, we examined data from 359 CK-MDS patients shared by the International Working Group for MDS. Mutations were underrepresented with the exception of TP53 mutations, identified in 55% of patients. TP53 mutated patients had even fewer co-mutated genes but were enriched for the del(5q) chromosomal abnormality (p < 0.005), monosomal karyotype (p < 0.001), and high complexity, defined as more than 4 cytogenetic abnormalities (p < 0.001). Monosomal karyotype, high complexity, and TP53 mutation were individually associated with shorter overall survival, but monosomal status was not significant in a multivariable model. Multivariable survival modeling identified severe anemia (hemoglobin < 8.0 g/dL), NRAS mutation, SF3B1 mutation, TP53 mutation, elevated blast percentage (>10%), abnormal 3q, abnormal 9, and monosomy 7 as having the greatest survival risk. The poor risk associated with CK-MDS is driven by its association with prognostically adverse TP53 mutations and can be refined by considering clinical and karyotype features.

Indexed as

Chromosome AberrationsMutationAgedAged, 80 and overBiomarkers, TumorCombined Modality TherapyFemaleFollow-Up StudiesHumansKaryotypingMaleMiddle AgedMyelodysplastic SyndromesPrognosisSurvival RateTumor Suppressor Protein p53Biomarkers, TumorTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID30635634
PMCPMC6609480

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.