Evidence map›Paper›PMID 30635574›Full record

ArticleNature communications2019

Pentatricopeptide repeat poly(A) binding protein KPAF4 stabilizes mitochondrial mRNAs in Trypanosoma brucei.

Mikhail V Mesitov, Tian Yu, Takuma Suematsu, Francois M Sement, Liye Zhang, Clinton Yu, Lan Huang, Inna Aphasizheva

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 16 citations in OpenAlex.

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  8. Mitochondrial RNA quality control in trypanosomes.Wiley interdisciplinary reviews. RNA · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Mikhail V MesitovDepartment of Molecular and Cell Biology, Boston University Medical Campus, Boston, MA, 02118, USA.
Tian YuDepartment of Molecular and Cell Biology, Boston University Medical Campus, Boston, MA, 02118, USA.
Takuma SuematsuDepartment of Molecular and Cell Biology, Boston University Medical Campus, Boston, MA, 02118, USA.
Francois M SementDepartment of Molecular and Cell Biology, Boston University Medical Campus, Boston, MA, 02118, USA.
Liye ZhangSchool of Life Science and Technology, ShanghaiTechUniversity, 201210, Shanghai, China.
Clinton YuDepartment of Physiology and Biophysics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Lan HuangDepartment of Physiology and Biophysics, School of Medicine, University of California, Irvine, CA, 92697, USA.
Inna AphasizhevaDepartment of Molecular and Cell Biology, Boston University Medical Campus, Boston, MA, 02118, USA. innaaf@bu.edu.ORCID http://orcid.org/0000-0003-2695-2950
Boston University · USUniversity of California, Irvine · USShanghaiTech University · CN

Funding

REPEAT-CONTAINING RNA BINDING PROTEINS OF TRYPANOSOMESR01AI113157 · NIAID · BOSTON UNIVERSITY MEDICAL CAMPUS · PI AFASIZHEVA, INNA · 2015 to 2024
$4.6M
NIAID NIH HHS R01 AI113157
6 · The paper itself

Abstract

In Trypanosoma brucei, most mitochondrial mRNAs undergo editing, and 3' adenylation and uridylation. The internal sequence changes and terminal extensions are coordinated: pre-editing addition of the short (A) tail protects the edited transcript against 3'-5' degradation, while post-editing A/U-tailing renders mRNA competent for translation. Participation of a poly(A) binding protein (PABP) in coupling of editing and 3' modification processes has been inferred, but its identity and mechanism of action remained elusive. We report identification of KPAF4, a pentatricopeptide repeat-containing PABP which sequesters the A-tail and impedes mRNA degradation. Conversely, KPAF4 inhibits uridylation of A-tailed transcripts and, therefore, premature A/U-tailing of partially-edited mRNAs. This quality check point likely prevents translation of incompletely edited mRNAs. We also find that RNA editing substrate binding complex (RESC) mediates the interaction between the 5' end-bound pyrophosphohydrolase MERS1 and 3' end-associated KPAF4 to enable mRNA circularization. This event appears to be critical for edited mRNA stability.

Indexed as

MitochondriaPoly(A)-Binding ProteinsRNA EditingRNA InterferenceRNA, MessengerRNA, MitochondrialRNA, ProtozoanRNA, Small InterferingRNA StabilityTrypanosoma brucei bruceimitochondrial messenger RNAPoly(A)-Binding ProteinsRNA, MessengerRNA, MitochondrialRNA, ProtozoanRNA, Small Interfering

Identifiers

PMID30635574
PMCPMC6329795
OpenAlexW2914859875

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.