Evidence map›Paper›PMID 30635399›Full record

ArticleThe Journal of biological chemistry2019

Skeletal muscle-specific knockout of DEP domain containing 5 protein increases mTORC1 signaling, muscle cell hypertrophy, and mitochondrial respiration.

Ted G Graber, Christopher S Fry, Camille R Brightwell, Tatiana Moro, Rosario Maroto, Nisha Bhattarai, Craig Porter, Maki Wakamiya, Blake B Rasmussen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

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  16. Measuring Exercise Capacity and Physical Function in Adult and Older Mice.The journals of gerontology. Series A, Biological sciences and medical sciences · 2021
    Article
  17. Article
  18. LINCing Nuclear Mechanobiology With Skeletal Muscle Mass and Function.Frontiers in cell and developmental biology · 2021
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 6 countries.

Ted G GraberFrom the Division of Rehabilitation Sciences.
Christopher S Frythe Department of Nutrition and Metabolism.
Camille R Brightwellthe Program in Cell Biology.
Tatiana Morothe Department of Nutrition and Metabolism.
Rosario Marotothe Department of Nutrition and Metabolism.
Nisha Bhattaraithe Department of Surgery: Burn Metabolism, and.
Craig Porterthe Department of Surgery: Burn Metabolism, and.
Maki Wakamiyathe Transgenics Core Facility, University of Texas Medical Branch, Galveston, Texas 77555.
Blake B Rasmussenthe Department of Nutrition and Metabolism, blrasmus@utmb.edu.ORCID 0000-0001-7854-5375
Nutrition 21 (United States) · USBurn Institute · USInstitute of Molecular and Cell Biology · RUThe University of Texas Medical Branch at Galveston · USUniversity of Madras · IN

Funding

UTMB OAIC Research Education Component (REC)P30AG024832 · NIA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI JAMES S. GOODWIN, MD, MELISSA M. MORROW · 2005 to 2026
$26.7M
HEALTH OF OLDER MINORITIEST32AG000270 · NIA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI Brian Gregory Downer, NEIL MEHTA · 1999 to 2026
$5.2M
UTMB Clinical and Translational Science AwardKL2TR001441 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI AMEREDES, BILL T · 2015 to 2024
$4.0M
UTMB Clinical and Translational Science AwardTL1TR001440 · NCATS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HOMMEL, JONATHAN DEAN · 2015 to 2024
$3.4M
Myostatin Alters Muscle Composition as The Result of an ACL InjuryR01AR072061 · NIAMS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI FRY, CHRISTOPHER · 2018 to 2023
$2.2M
Nutrient Sensing & Signaling in Aging MuscleR56AG051267 · NIA · UNIVERSITY OF TEXAS MED BR GALVESTON · PI RASMUSSEN, BLAKE B · 2015 to 2015
$468k
NCATS NIH HHS KL2 TR001441NCATS NIH HHS TL1 TR001440NIAMS NIH HHS R01 AR072061NIA NIH HHS P30 AG024832NIA NIH HHS R56 AG051267NIA NIH HHS T32 AG000270
6 · The paper itself

Abstract

mTORC1 regulates protein synthesis and in turn is regulated by growth factors, energy status, and amino acid availability. In kidney cell (HEK293-T) culture, the GAP activity toward RAG (GATOR1) protein complex suppresses activation of the RAG A/B-RAG C/D heterodimer when amino acids are insufficient. During amino acid sufficiency, the RAG heterodimer recruits mTORC1 to the lysosomal membrane where its interaction with Ras homolog enriched in brain (Rheb) stimulates mTORC1's kinase activity. The DEP domain containing 5 (DEPDC5) protein, a GATOR1 subunit, causes familial focal epilepsy when mutated, and global knockout of the Depdc5 gene is embryonically lethal. To study the function of DEPDC5 in skeletal muscle, we generated a muscle-specific inducible Depdc5 knockout mouse, hypothesizing that knocking out Depdc5 in muscle would make mTORC1 constitutively active, causing hypertrophy and improving muscle function. Examining mTORC1 signaling, morphology, mitochondrial respiratory capacity, contractile function, and applied physical function (

Indexed as

AnimalsCells, CulturedGTPase-Activating ProteinsHEK293 CellsHumansMechanistic Target of Rapamycin Complex 1MiceMice, KnockoutMice, TransgenicMitochondriaMuscle, SkeletalSignal TransductionDepdc5 protein, mouseGTPase-Activating ProteinsMechanistic Target of Rapamycin Complex 1amino acid sensingGATOR1 (GTPase-activating protein (GAP) activity toward Rags-1)gene knockoutmTOR complex (mTORC)musclemuscle contractilitymuscle hypertrophytransgenic micetranslation control

Identifiers

PMID30635399
PMCPMC6422100
OpenAlexW2908565603

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.